View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_4 (Length: 566)
Name: NF11265_low_4
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 45975507 - 45976059
Alignment:
| Q |
1 |
agcagcttcagataacaacttaaaaccatattgcaactagcgttcaataatatttgtgtgattaaatatgccatttttggttatcaggtgagtgggtgct |
100 |
Q |
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| T |
45975507 |
agcagctgcagataacaacttaaaaccatattgcaactagcgttcattaatatttgtgtgattaaatatgccatttttggttatcaggtgagtgggtgct |
45975606 |
T |
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| Q |
101 |
tgtcgtatacggataagataagtgatggattttacaacatactggggatgaatccgtatctgtgggtgatgtgcaatgacgaggaagaaggtaagaagat |
200 |
Q |
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| T |
45975607 |
tgtcatatacggataagataagtgatggattttacaacatactggggatgaatccgtatctgtgggtgatgtgcaatgacgaggaagaaggtaagaagat |
45975706 |
T |
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| Q |
201 |
acccactttgatggcacttaaagccgttgaaccaagcgaggcatctatggaggtggtgcttgtcgataggcaagaagattctcgcttgaagctacttcat |
300 |
Q |
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| T |
45975707 |
acccactttgatggcacttaaagccgttgaaccaagcgaggcatctatggaggtggtgcttgtcgataggcaagaagattctcgcttgaagctacttcat |
45975806 |
T |
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| Q |
301 |
gataaagctcaggagttgtatcgttcttcggagaacaccttggtgtttgttgaacaactgggaaaacttgttgccataaatatggggtatatatagtagt |
400 |
Q |
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| T |
45975807 |
gataaagctcaggagttgtatcgttcttcagagaacaccttggtgtttgttgaacaactgggaaaacttgttgccataaatatggggtatatatagtagt |
45975906 |
T |
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| Q |
401 |
attcttcaatataa---tcacttttttccttattatgttgttgctattctgagtgtgtatattattgaaggggtatattcccggtggagcgaggagatct |
497 |
Q |
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| T |
45975907 |
attcttcaatataatcttcacttttttccttattatgttgttgctattctgagtgtgtatattattgaaggggtatattcccggtggagcgaggagatct |
45976006 |
T |
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| Q |
498 |
ccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtg |
550 |
Q |
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| T |
45976007 |
ccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtg |
45976059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 542
Target Start/End: Complemental strand, 28052450 - 28052383
Alignment:
| Q |
475 |
ttcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttca |
542 |
Q |
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| T |
28052450 |
ttccctgtggagcaaggagatctgcaaaaaaggtggaagatggttagtaagcggttgaggaattttca |
28052383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 28052935 - 28052879
Alignment:
| Q |
124 |
gatggattttacaacatactggggatgaatccgtatctgtgggtgatgtgcaatgac |
180 |
Q |
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| T |
28052935 |
gatggattttataacatattgggaatgaatccgtatttgtgggttatgtgtaatgac |
28052879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 374
Target Start/End: Complemental strand, 28052763 - 28052682
Alignment:
| Q |
293 |
tacttcatgataaagctcaggagttgtatcgttcttcggagaacaccttggtgtttgttgaacaactgggaaaacttgttgc |
374 |
Q |
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| T |
28052763 |
tacttcaagataaagctcaagagttgtattctgcttctgagaatgccttggtgctcgttgaaaagcttggaaaacttgttgc |
28052682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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