View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_5 (Length: 482)
Name: NF11265_low_5
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 47802804 - 47802470
Alignment:
| Q |
17 |
atgttgatgatgtaattcaagatggtaaattatttgaatgaatttgcacatatcaaagccattatggatgaatttttcaaaactaaagacattggttcat |
116 |
Q |
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| T |
47802804 |
atgttgatgatgtaattcaagatggtaaattatttgaatgaatttgcacatatcaaagccattatggatgaatttttcaaaactaaagacattggttcat |
47802705 |
T |
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| Q |
117 |
tgaactactttttgggattagaggtagcaagaacacaaaagggaattttattgtgccaacgcaaatattgtgttgatttgttgacatataggttgcaaac |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47802704 |
tgaactactttttgggattggaggtagcaagaacacaaaagggaattttattgtgccaacgcagatattgtgttgatttgttgacatataggttgcaaac |
47802605 |
T |
|
| Q |
217 |
ctgttggtacaccatttggtccttctattaaaatgcatcaagatgacaatgcccctttcattgatatcttataaaaggttagtaggtcatttgttatatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47802604 |
ctgttggtacaccatttggtccttctattaaaatgcatcaagatgacaattcccctttcattgatatcttataaaaggttaataggtcatttgttatatc |
47802505 |
T |
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| Q |
317 |
tcaaaactacaaatctgtcatcacattcatggtgc |
351 |
Q |
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| T |
47802504 |
tcaaaactacaaatctgacatcacattcattgtgc |
47802470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 5929191 - 5929227
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttccca |
383 |
Q |
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| T |
5929191 |
ggtgccatttcacatgggaaaggtgaaaaccttccca |
5929227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 347 - 476
Target Start/End: Complemental strand, 42067136 - 42067007
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttacattttgaggttgtattaaattttatcatatgtctc |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42067136 |
ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtctc |
42067037 |
T |
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| Q |
447 |
ccacaccatagcatttctctttcttctctc |
476 |
Q |
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| T |
42067036 |
ccacaccatagcacttctctttcttctctc |
42067007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 347 - 476
Target Start/End: Original strand, 21443501 - 21443630
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttacattttgaggttgtattaaattttatcatatgtctc |
446 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21443501 |
ggtgtcatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtctc |
21443600 |
T |
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| Q |
447 |
ccacaccatagcatttctctttcttctctc |
476 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
21443601 |
ccacaccatagcacttctctttcttctctc |
21443630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 347 - 476
Target Start/End: Complemental strand, 50012957 - 50012828
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttacattttgaggttgtattaaattttatcatatgtctc |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
50012957 |
ggtgccatttcacatgggaaaggtgaaaatcttcccatgatagaccacatgtgattataggttagattttgaggttgaattaaattttatcatatgtctc |
50012858 |
T |
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| Q |
447 |
ccacaccatagcatttctctttcttctctc |
476 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
50012857 |
ccacaccatagcacttctctttcttctctc |
50012828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 347 - 460
Target Start/End: Complemental strand, 21444515 - 21444402
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttacattttgaggttgtattaaattttatcatatgtctc |
446 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |
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| T |
21444515 |
ggtgccttttcacatgggaaaggtgaaaatcttcccatgataaaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctc |
21444416 |
T |
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| Q |
447 |
ccacaccatagcat |
460 |
Q |
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|||||||||||||| |
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| T |
21444415 |
ccacaccatagcat |
21444402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 347 - 460
Target Start/End: Original strand, 50011949 - 50012062
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttacattttgaggttgtattaaattttatcatatgtctc |
446 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||| ||||||||| |
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| T |
50011949 |
ggtgccttttcatatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataagttagatcttgaggttgaattaaattttattatatgtctc |
50012048 |
T |
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| Q |
447 |
ccacaccatagcat |
460 |
Q |
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| T |
50012049 |
ccacaccatagcat |
50012062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 367 - 460
Target Start/End: Original strand, 42066144 - 42066237
Alignment:
| Q |
367 |
aggtgaaaatcttcccatgatggaccacatgtgattataggttacattttgaggttgtattaaattttatcatatgtctcccacaccatagcat |
460 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42066144 |
aggtgaaaatcttctcatgatagaccacatgtgattatagattagatcttgaggttgtattaaattttattatatgtctcccacaccatagcat |
42066237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 42843880 - 42843921
Alignment:
| Q |
342 |
ttcatggtgccatttcacatgggaaaggtgaaaatcttccca |
383 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
42843880 |
ttcaaggtgccatttcacatgggaaaggtgaaaaccttccca |
42843921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 9124444 - 9124408
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttccca |
383 |
Q |
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| T |
9124444 |
ggtgccatttcacatgggaaaggtgaaaaccttccca |
9124408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 9123614 - 9123650
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttccca |
383 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||| |
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| T |
9123614 |
ggtggcatttcacatggaaaaggtgaaaatcttccca |
9123650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 7088005 - 7087968
Alignment:
| Q |
347 |
ggtgccatttcacatgggaaaggtgaaaatcttcccat |
384 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||| |
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| T |
7088005 |
ggtggcatttcacatgggaaaggttaaaatcttcccat |
7087968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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