View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_8 (Length: 391)
Name: NF11265_low_8
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 14495005 - 14495281
Alignment:
| Q |
20 |
aagggtatgtacaaaaataatggaaaattttgttaaaataattatnnnnnnnnnnn---tgatgaacaaaactacaaaaggttgaagagtttcagaatta |
116 |
Q |
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| T |
14495005 |
aagggtatgtacaaaaataatggaaaattttgttaaaataataaaaaaaaaaaaaaaaatgatgaacaaaactacaaaaggttgaagagtttcagaatta |
14495104 |
T |
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| Q |
117 |
gaagctctttgtgggaaaaaggaagagaatctttaaaagaaaggaaaacatataagagaaatacagttcattattcgaattcactaggcatgcgtgtaat |
216 |
Q |
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| T |
14495105 |
gaagctctttgtgggaaaaaggaagagaatctttaaaagaaaggaaaacatataagagaaatacagttcattattcgaattcactaggcatgcgtgtaat |
14495204 |
T |
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| Q |
217 |
gtcccaaagtattaaagtgaataaagtggtgcatgttgttaactaagactagacattgtacaacactttgttgcact |
293 |
Q |
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| T |
14495205 |
gtcccaaagtattaaagtgaataaagtggtgcatgttgttaactaagactagacattgtacaacactttgttgcact |
14495281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 14495334 - 14495368
Alignment:
| Q |
346 |
atcttggaatgaaaacataaaataacttcccctat |
380 |
Q |
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| T |
14495334 |
atcttggaatgaaaacataaaataacttcccctat |
14495368 |
T |
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