View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_high_1 (Length: 948)
Name: NF11266_high_1
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 745; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 11 - 930
Target Start/End: Complemental strand, 25641641 - 25640738
Alignment:
| Q |
11 |
cagagacaacaactaagcaataataatgaaagacatgatgcccaacaagttatagaatttccctaactatgcaatttaggcatttagctacatggatgaa |
110 |
Q |
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| T |
25641641 |
cagagacaacagctaagcaataataatgaaagacatgatgcccaacaagttatagaatttccctaactatgcaatttaggcatttagctacatggatgaa |
25641542 |
T |
|
| Q |
111 |
acatgttaaaaattttgtcggatatgatttcctaaattttgttatgtaaaactaagcatgtaattttcatgacgcatccacatgtttgttttcacttttc |
210 |
Q |
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| T |
25641541 |
acatgttaaaatttttgtctgatatgatttcctaaattttgttatgtaaaactaagcatgtaattttcatgacgcatccacatgtttgttttcatttttc |
25641442 |
T |
|
| Q |
211 |
accttaagcaatatatatgcataaaaacatggaaaagtgcaacagacagaaaggaaaaagaaaagcttactagctgcgacataaacttgtaagagtgtct |
310 |
Q |
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| T |
25641441 |
accttaagcaatatatatgcataaaaacatggaaaagtgcaacagacagaaaggaaaaa-aaaaccttactagccgcgacataaacttgtaagagtgcca |
25641343 |
T |
|
| Q |
311 |
tcaatctttctaatcttatttgaagtataaaccaagaaatacttgtagttttcaggatatgaaacaataccctactggtatgtggttacattacatatcc |
410 |
Q |
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| T |
25641342 |
tcaatctttctaatcttatttgaagtataaaccaagaaatacttgtagttttcaggatatgaaacaataccctactggtatgtggttacattacatgtcc |
25641243 |
T |
|
| Q |
411 |
accaaaatatcctaaagttaactaaaacaaatcatagaaacaaaaatagaacaatccttcaacagatggccaaattcatattcttgtgtacacaaacctc |
510 |
Q |
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| T |
25641242 |
accaaaatatcctaaagttaactaaaacaaatcacagaaacaaaaatagaacaatccttcaacagatggccaaattcatattcttgtgtacacaaacctc |
25641143 |
T |
|
| Q |
511 |
tattctcttctctcttcagttaggttatcaaatcattacttcaattattcacaaatcatcacaatccacttcacttaagttaagacctgcatcaattgaa |
610 |
Q |
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| T |
25641142 |
tattctcttctctcttcagttaggttatcaaatcattacttcaattattcacaaatcatcacaatccacttcacttaagttaagacctgcatcaattgaa |
25641043 |
T |
|
| Q |
611 |
caaaattcattaaatttgacttccttccatgaaccaatgtcagtgaaactaaagtcttgactcttgaggagtttaattttcaagcactgtggcgtaaaaa |
710 |
Q |
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| T |
25641042 |
caaaattcattaaattttacttccttccatgaaacaatgtcaatgaaactaaaatcttaac-------gagtttaattttcaagcactgcggcataaaaa |
25640950 |
T |
|
| Q |
711 |
gttttacacagtctgtacattcacaatcaatcatgtgtgtgactttgaaagcgattatggtcaatgacaaacgttgtctgacagttatgattatgaatta |
810 |
Q |
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| T |
25640949 |
gttttacacagtcagtacattcacaatcaatcatgtgtgtgactttgaaagtgattatggtcaatgacgaacgctgtctaacagttataattatgaatta |
25640850 |
T |
|
| Q |
811 |
ttgacaatgtacaaattatgtaaatagagacactactacgaactttgtagcatcaacacttctcatcgaatgcatgtttggtgtccgacacatgttagtc |
910 |
Q |
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| T |
25640849 |
ttgacaatgtaaaaattatgtaaatagcgacactactacgaactttgtagcatcaacacttctcatcgaa--------tggtgtctgacacatgttagtc |
25640758 |
T |
|
| Q |
911 |
tccgacaccgacacgacaat |
930 |
Q |
| |
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|| |||||| |||||||||| |
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| T |
25640757 |
tctgacacctacacgacaat |
25640738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 583
Target Start/End: Complemental strand, 25643975 - 25643913
Alignment:
| Q |
521 |
tctcttcagttaggttatcaaatcattacttcaattattcacaaatcatcacaatccacttca |
583 |
Q |
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| T |
25643975 |
tctcttcagttaggttgtcagaacatcacttcaattattcacaaatcattgcaatccacttca |
25643913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 854 - 903
Target Start/End: Original strand, 45200547 - 45200596
Alignment:
| Q |
854 |
tttgtagcatcaacacttctcatcgaatgcatgtttggtgtccgacacat |
903 |
Q |
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||||||||||| |||||||| |||||||| |||| |||||||| |||||| |
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| T |
45200547 |
tttgtagcatcgacacttctgatcgaatgtatgtatggtgtccaacacat |
45200596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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