View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_high_11 (Length: 426)
Name: NF11266_high_11
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 26846246 - 26846663
Alignment:
| Q |
1 |
gatatctgcaaggtacattccttctctatttcttactactttcaacagggttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaac |
100 |
Q |
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| T |
26846246 |
gatatctgcaaggtacattccttctctatttcttactactttcaacagggttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaac |
26846345 |
T |
|
| Q |
101 |
tgcaacacaactgcagttgaggcagtatcagccttctttgactgattttcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaa |
200 |
Q |
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| T |
26846346 |
tgcaacacaactgcagttgaggcagtatcagccttctttgactgattttcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaa |
26846445 |
T |
|
| Q |
201 |
ataggatgaagatcatagcctatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagaccgagcaatataggaaataacatttttatt |
300 |
Q |
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| T |
26846446 |
ataggatgaagatcatagcttatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagactgagcaatataggaaataacatttttatt |
26846545 |
T |
|
| Q |
301 |
gcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaa |
400 |
Q |
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| T |
26846546 |
gcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaa |
26846645 |
T |
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| Q |
401 |
cacagcaggtttcttctc |
418 |
Q |
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| T |
26846646 |
cacaacaggtttcttctc |
26846663 |
T |
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Back To:
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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 54881118 - 54881202
Alignment:
| Q |
293 |
tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
377 |
Q |
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||||| |||||||||||||||| ||||||||||||| ||||||| ||||| || || ||||| ||||||||| |||| ||||||| |
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| T |
54881118 |
tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
54881202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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