View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11266_high_12 (Length: 421)

Name: NF11266_high_12
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11266_high_12
NF11266_high_12
[»] chr7 (2 HSPs)
chr7 (110-408)||(22276301-22276600)
chr7 (14-113)||(22275103-22275198)
[»] chr1 (3 HSPs)
chr1 (317-412)||(11038906-11039000)
chr1 (288-362)||(10682660-10682732)
chr1 (317-407)||(45982611-45982700)
[»] chr5 (1 HSPs)
chr5 (135-230)||(41486275-41486372)
[»] chr2 (2 HSPs)
chr2 (157-230)||(10850692-10850767)
chr2 (157-230)||(10878206-10878281)
[»] chr8 (1 HSPs)
chr8 (299-412)||(8234957-8235068)
[»] chr3 (1 HSPs)
chr3 (195-252)||(26150504-26150563)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 110 - 408
Target Start/End: Original strand, 22276301 - 22276600
Alignment:
Q  110 tgagaagaattcattacgtatgtgatataaagttttggtacacgtccgttcgtagtactagtattatctaattaagtatataagttatcttaatattgc- 208  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||     
T  22276301 tgagaagaattcattacgtatgtgatataaagttccggtacacgtcggttcgtagtactaatattacctaattaagtatataagttatcttaatattgca 22276400  T
Q  209 aaaaagtagaaaaattatagtaatctcctacaacaaagtagtgcacattttcagaaaca-nnnnnnnatattcattttgtttttgtcagtgttattttgc 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||        |||||||||||||||| ||||||||||||||||    
T  22276401 aaaaagtagaaaaattatagtaatctcctgcaacaaagtagtg-acatttttagaaacattttttttatattcattttgttttagtcagtgttattttgc 22276499  T
Q  308 aaaaatacgttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcctactcaactt 407  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  22276500 aaaaatatgttctctttctccaagctacaaagagattttcatgtaaaatttatttacttcattaaagctttttctttatcttttatctcctactcaactt 22276599  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 22275103 - 22275198
Alignment:
Q  14 cacttcaaactaactgattgtgaagggcaacttataaataaaaccgataggtaagtgtagctagctactatcagtatgataggatgatcatttttgtgag 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  22275103 cacttcaaactaactgattgtgaagggcaaattataaataaaaccgataggtaagtg----tagctactatcagtatgataggatgatcatttttgtgag 22275198  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 412
Target Start/End: Complemental strand, 11039000 - 11038906
Alignment:
Q  317 ttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcctactcaacttcatct 412  Q
    |||||||||||||||||  ||||||||||| || |||||||||||| | || |  ||| |||| ||||||||||||||||||||||||||||||||    
T  11039000 ttctctttctccaagctttaaagagatttt-atccaaaatttatttgcgtcacggaaggttttcctttatcttttatctcctactcaacttcatct 11038906  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 10682660 - 10682732
Alignment:
Q  288 ttttgtcagtgttattttgcaaaaatacgttctctttctccaagctacaaagagattttcatgcaaaatttattt 362  Q
    |||| ||||||||||||||||| |  | |||||||||||||||||| ||||||||||||| | ||||||||||||    
T  10682660 ttttatcagtgttattttgcaagac-atgttctctttctccaagcttcaaagagattttc-tacaaaatttattt 10682732  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 407
Target Start/End: Complemental strand, 45982700 - 45982611
Alignment:
Q  317 ttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcctactcaactt 407  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||| |  | |  ||| ||||  |||||| || ||||||||||||||||    
T  45982700 ttctctttctccatgcttcaaagagatttt-atgcaaaatttatttgcaccgccgaaggttttcttttatcattcatctcctactcaactt 45982611  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 41486275 - 41486372
Alignment:
Q  135 tataaagttttggtacacgtccgttcgtagtactagtattatctaattaagtat-ataagttatcttaatattgcaaa-aagtagaaaaattatagta 230  Q
    ||||||| || ||||  |||| |||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| ||||||||  |||||||||    
T  41486275 tataaagattaggtatgcgtcggttcgtagtactagtactatttaattaagtataataagctatcttaatattgcaaacaagtagaaggattatagta 41486372  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 10850692 - 10850767
Alignment:
Q  157 gttcgtagtactagtattatctaattaagtata-taagttatcttaatattgcaaaaa-gtagaaaaattatagta 230  Q
    |||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||| ||||||  |||||||||    
T  10850692 gttcgtagtactagtaatacctaattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagta 10850767  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 10878206 - 10878281
Alignment:
Q  157 gttcgtagtactagtattatctaattaagtata-taagttatcttaatattgcaaaaa-gtagaaaaattatagta 230  Q
    |||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||| ||||||  |||||||||    
T  10878206 gttcgtagtactagtaatacctaattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagta 10878281  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 412
Target Start/End: Complemental strand, 8235068 - 8234957
Alignment:
Q  299 ttattttgcaaaaatacgttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcct 398  Q
    |||||||||||||  || ||||||||||||||| | |||||||||||| ||||||||||||||| | || |   |  |||| |||||||||||||||  |    
T  8235068 ttattttgcaaaag-acattctctttctccaagtttcaaagagatttt-atgcaaaatttatttgcatcaccgtatgttttcctttatcttttatctaat 8234971  T
Q  399 actcaacttcatct 412  Q
    ||||||| ||||||    
T  8234970 actcaacctcatct 8234957  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 26150563 - 26150504
Alignment:
Q  195 tatcttaatattgcaaaaa--gtagaaaaattatagtaatctcctacaacaaagtagtgc 252  Q
    |||||||||||||||||||  |||||| |||||||||| ||| |||||||||| ||||||    
T  26150563 tatcttaatattgcaaaaaaagtagaagaattatagtagtctgctacaacaaactagtgc 26150504  T

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