View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11266_high_28 (Length: 237)

Name: NF11266_high_28
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11266_high_28
NF11266_high_28
[»] scaffold0040 (2 HSPs)
scaffold0040 (132-163)||(56780-56811)
scaffold0040 (132-160)||(58849-58877)
[»] scaffold0011 (2 HSPs)
scaffold0011 (132-163)||(185259-185290)
scaffold0011 (132-163)||(223154-223185)
[»] chr8 (5 HSPs)
chr8 (132-163)||(19163570-19163601)
chr8 (133-163)||(10297638-10297668)
chr8 (136-164)||(7996940-7996968)
chr8 (132-160)||(33451386-33451414)
chr8 (132-164)||(42051569-42051601)
[»] chr7 (8 HSPs)
chr7 (132-163)||(5526721-5526752)
chr7 (132-163)||(10244723-10244754)
chr7 (132-163)||(19416510-19416541)
chr7 (132-163)||(20243251-20243282)
chr7 (132-163)||(31038556-31038587)
chr7 (132-163)||(38728204-38728235)
chr7 (132-163)||(39801702-39801733)
chr7 (132-163)||(48980483-48980514)
[»] chr6 (6 HSPs)
chr6 (132-163)||(4494905-4494936)
chr6 (132-163)||(17382080-17382111)
chr6 (132-163)||(20744134-20744165)
chr6 (132-163)||(32053784-32053815)
chr6 (134-163)||(7989224-7989253)
chr6 (134-163)||(26320597-26320626)
[»] chr5 (9 HSPs)
chr5 (132-163)||(10199015-10199046)
chr5 (132-163)||(20175721-20175752)
chr5 (132-163)||(28207128-28207159)
chr5 (132-163)||(37932326-37932357)
chr5 (133-163)||(32283576-32283606)
chr5 (134-163)||(36818931-36818960)
chr5 (135-163)||(8902810-8902838)
chr5 (135-163)||(26409252-26409280)
chr5 (132-160)||(39980504-39980532)
[»] chr4 (9 HSPs)
chr4 (132-163)||(2186367-2186398)
chr4 (132-163)||(9946423-9946454)
chr4 (132-163)||(23809945-23809976)
chr4 (132-167)||(47814281-47814316)
chr4 (132-163)||(52270064-52270095)
chr4 (132-160)||(11198760-11198788)
chr4 (132-160)||(15849230-15849258)
chr4 (132-164)||(23247631-23247663)
chr4 (132-160)||(24665028-24665056)
[»] chr3 (11 HSPs)
chr3 (132-163)||(10498729-10498760)
chr3 (132-163)||(21506792-21506823)
chr3 (132-163)||(25340958-25340989)
chr3 (132-163)||(39481137-39481168)
chr3 (132-163)||(44579632-44579663)
chr3 (133-163)||(14827522-14827552)
chr3 (133-163)||(47313406-47313436)
chr3 (134-163)||(32836171-32836200)
chr3 (134-163)||(50037309-50037338)
chr3 (132-160)||(27999734-27999762)
chr3 (135-163)||(32629079-32629107)
[»] chr2 (7 HSPs)
chr2 (132-163)||(9383243-9383274)
chr2 (132-163)||(22523046-22523077)
chr2 (132-163)||(36648824-36648855)
chr2 (132-163)||(44526124-44526155)
chr2 (134-163)||(42066710-42066739)
chr2 (134-162)||(15333123-15333151)
chr2 (132-160)||(32063625-32063653)
[»] chr1 (10 HSPs)
chr1 (132-163)||(2613718-2613749)
chr1 (132-163)||(17280118-17280149)
chr1 (132-163)||(24752682-24752713)
chr1 (132-163)||(42045406-42045437)
chr1 (132-162)||(40268206-40268236)
chr1 (132-162)||(51831270-51831300)
chr1 (132-161)||(12364141-12364170)
chr1 (135-163)||(14520943-14520971)
chr1 (135-163)||(42888574-42888602)
chr1 (135-163)||(45140040-45140068)
[»] scaffold0118 (1 HSPs)
scaffold0118 (133-163)||(39995-40025)
[»] scaffold0031 (1 HSPs)
scaffold0031 (134-163)||(47275-47304)
[»] scaffold0735 (1 HSPs)
scaffold0735 (135-163)||(1527-1555)


Alignment Details
Target: scaffold0040 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 56780 - 56811
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  56780 cctcgtgagcttagctcagttggtatggacaa 56811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 58849 - 58877
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  58849 cctcgtgagcttagctcagttggtatgga 58877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 185259 - 185290
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  185259 cctcgtgagcttagctcagttggtatggacaa 185290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 223154 - 223185
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  223154 cctcgtgagcttagctcagttggtatggacaa 223185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 19163601 - 19163570
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  19163601 cctcgtgagcttagctcagttggtatggacaa 19163570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 10297638 - 10297668
Alignment:
Q  133 ctcgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||||    
T  10297638 ctcgtgagcttagctcagttggtatggacaa 10297668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 7996940 - 7996968
Alignment:
Q  136 gtgagcttagctcagttggtatggacaac 164  Q
    |||||||||||||||||||||||||||||    
T  7996940 gtgagcttagctcagttggtatggacaac 7996968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 33451414 - 33451386
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  33451414 cctcgtgagcttagctcagttggtatgga 33451386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 42051569 - 42051601
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaac 164  Q
    |||||||||||||||||||||||| ||||||||    
T  42051569 cctcgtgagcttagctcagttggtttggacaac 42051601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 5526721 - 5526752
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  5526721 cctcgtgagcttagctcagttggtatggacaa 5526752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 10244723 - 10244754
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  10244723 cctcgtgagcttagctcagttggtatggacaa 10244754  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 19416510 - 19416541
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  19416510 cctcgtgagcttagctcagttggtatggacaa 19416541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 20243251 - 20243282
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  20243251 cctcgtgagcttagctcagttggtatggacaa 20243282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 31038587 - 31038556
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  31038587 cctcgtgagcttagctcagttggtatggacaa 31038556  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 38728204 - 38728235
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  38728204 cctcgtgagcttagctcagttggtatggacaa 38728235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 39801702 - 39801733
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  39801702 cctcgtgagcttagctcagttggtatggacaa 39801733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 48980483 - 48980514
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  48980483 cctcgtgagcttagctcagttggtatggacaa 48980514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 4494936 - 4494905
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  4494936 cctcgtgagcttagctcagttggtatggacaa 4494905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 17382080 - 17382111
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  17382080 cctcgtgagcttagctcagttggtatggacaa 17382111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 20744134 - 20744165
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  20744134 cctcgtgagcttagctcagttggtatggacaa 20744165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 32053784 - 32053815
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  32053784 cctcgtgagcttagctcagttggtatggacaa 32053815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 7989253 - 7989224
Alignment:
Q  134 tcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||    
T  7989253 tcgtgagcttagctcagttggtatggacaa 7989224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 26320626 - 26320597
Alignment:
Q  134 tcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||    
T  26320626 tcgtgagcttagctcagttggtatggacaa 26320597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 10199015 - 10199046
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  10199015 cctcgtgagcttagctcagttggtatggacaa 10199046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 20175721 - 20175752
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  20175721 cctcgtgagcttagctcagttggtatggacaa 20175752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 28207128 - 28207159
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  28207128 cctcgtgagcttagctcagttggtatggacaa 28207159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 37932326 - 37932357
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  37932326 cctcgtgagcttagctcagttggtatggacaa 37932357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 32283576 - 32283606
Alignment:
Q  133 ctcgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||||    
T  32283576 ctcgtgagcttagctcagttggtatggacaa 32283606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 36818931 - 36818960
Alignment:
Q  134 tcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||    
T  36818931 tcgtgagcttagctcagttggtatggacaa 36818960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 8902838 - 8902810
Alignment:
Q  135 cgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||    
T  8902838 cgtgagcttagctcagttggtatggacaa 8902810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 26409252 - 26409280
Alignment:
Q  135 cgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||    
T  26409252 cgtgagcttagctcagttggtatggacaa 26409280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 39980504 - 39980532
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  39980504 cctcgtgagcttagctcagttggtatgga 39980532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 2186398 - 2186367
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  2186398 cctcgtgagcttagctcagttggtatggacaa 2186367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 9946423 - 9946454
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  9946423 cctcgtgagcttagctcagttggtatggacaa 9946454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 23809945 - 23809976
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  23809945 cctcgtgagcttagctcagttggtatggacaa 23809976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 47814316 - 47814281
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaacaca 167  Q
    |||||| |||||||||||||||||||||||||||||    
T  47814316 cctcgtaagcttagctcagttggtatggacaacaca 47814281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 52270095 - 52270064
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  52270095 cctcgtgagcttagctcagttggtatggacaa 52270064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 11198760 - 11198788
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  11198760 cctcgtgagcttagctcagttggtatgga 11198788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 15849230 - 15849258
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  15849230 cctcgtgagcttagctcagttggtatgga 15849258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 23247663 - 23247631
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaac 164  Q
    ||||||||||||||||| |||||||||||||||    
T  23247663 cctcgtgagcttagctcggttggtatggacaac 23247631  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 24665056 - 24665028
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  24665056 cctcgtgagcttagctcagttggtatgga 24665028  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 10498760 - 10498729
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  10498760 cctcgtgagcttagctcagttggtatggacaa 10498729  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 21506823 - 21506792
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  21506823 cctcgtgagcttagctcagttggtatggacaa 21506792  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 25340989 - 25340958
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  25340989 cctcgtgagcttagctcagttggtatggacaa 25340958  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 39481137 - 39481168
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  39481137 cctcgtgagcttagctcagttggtatggacaa 39481168  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 44579632 - 44579663
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  44579632 cctcgtgagcttagctcagttggtatggacaa 44579663  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 14827522 - 14827552
Alignment:
Q  133 ctcgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||||    
T  14827522 ctcgtgagcttagctcagttggtatggacaa 14827552  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 47313436 - 47313406
Alignment:
Q  133 ctcgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||||    
T  47313436 ctcgtgagcttagctcagttggtatggacaa 47313406  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 32836171 - 32836200
Alignment:
Q  134 tcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||    
T  32836171 tcgtgagcttagctcagttggtatggacaa 32836200  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 50037309 - 50037338
Alignment:
Q  134 tcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||    
T  50037309 tcgtgagcttagctcagttggtatggacaa 50037338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 27999762 - 27999734
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  27999762 cctcgtgagcttagctcagttggtatgga 27999734  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 32629079 - 32629107
Alignment:
Q  135 cgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||    
T  32629079 cgtgagcttagctcagttggtatggacaa 32629107  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 9383274 - 9383243
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  9383274 cctcgtgagcttagctcagttggtatggacaa 9383243  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 22523077 - 22523046
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  22523077 cctcgtgagcttagctcagttggtatggacaa 22523046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 36648855 - 36648824
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  36648855 cctcgtgagcttagctcagttggtatggacaa 36648824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 44526124 - 44526155
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  44526124 cctcgtgagcttagctcagttggtatggacaa 44526155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 42066710 - 42066739
Alignment:
Q  134 tcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||    
T  42066710 tcgtgagcttagctcagttggtatggacaa 42066739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 15333123 - 15333151
Alignment:
Q  134 tcgtgagcttagctcagttggtatggaca 162  Q
    |||||||||||||||||||||||||||||    
T  15333123 tcgtgagcttagctcagttggtatggaca 15333151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 32063653 - 32063625
Alignment:
Q  132 cctcgtgagcttagctcagttggtatgga 160  Q
    |||||||||||||||||||||||||||||    
T  32063653 cctcgtgagcttagctcagttggtatgga 32063625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 2613718 - 2613749
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  2613718 cctcgtgagcttagctcagttggtatggacaa 2613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 17280149 - 17280118
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  17280149 cctcgtgagcttagctcagttggtatggacaa 17280118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 24752713 - 24752682
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  24752713 cctcgtgagcttagctcagttggtatggacaa 24752682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 42045437 - 42045406
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||||    
T  42045437 cctcgtgagcttagctcagttggtatggacaa 42045406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 40268206 - 40268236
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggaca 162  Q
    |||||||||||||||||||||||||||||||    
T  40268206 cctcgtgagcttagctcagttggtatggaca 40268236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 51831270 - 51831300
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggaca 162  Q
    |||||||||||||||||||||||||||||||    
T  51831270 cctcgtgagcttagctcagttggtatggaca 51831300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 12364170 - 12364141
Alignment:
Q  132 cctcgtgagcttagctcagttggtatggac 161  Q
    ||||||||||||||||||||||||||||||    
T  12364170 cctcgtgagcttagctcagttggtatggac 12364141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 14520943 - 14520971
Alignment:
Q  135 cgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||    
T  14520943 cgtgagcttagctcagttggtatggacaa 14520971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 42888574 - 42888602
Alignment:
Q  135 cgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||    
T  42888574 cgtgagcttagctcagttggtatggacaa 42888602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 45140068 - 45140040
Alignment:
Q  135 cgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||    
T  45140068 cgtgagcttagctcagttggtatggacaa 45140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 39995 - 40025
Alignment:
Q  133 ctcgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||||    
T  39995 ctcgtgagcttagctcagttggtatggacaa 40025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 47304 - 47275
Alignment:
Q  134 tcgtgagcttagctcagttggtatggacaa 163  Q
    ||||||||||||||||||||||||||||||    
T  47304 tcgtgagcttagctcagttggtatggacaa 47275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 1527 - 1555
Alignment:
Q  135 cgtgagcttagctcagttggtatggacaa 163  Q
    |||||||||||||||||||||||||||||    
T  1527 cgtgagcttagctcagttggtatggacaa 1555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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