View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_high_3 (Length: 632)
Name: NF11266_high_3
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 37232028 - 37232539
Alignment:
| Q |
1 |
agagatgcttcctgaggatgctaagctaaagaaagtagcggtggttgttgaaagtgcatcaaaacaagctgttcatggtgctcaaataacagaagaattc |
100 |
Q |
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| T |
37232028 |
agagacgcttcctgaggatgctaagctaaagaaagtagcggtggttgtagaaagtgcatcaaaacaagctgttcatggtgctcaaataacagaagaattc |
37232127 |
T |
|
| Q |
101 |
atacacaaggtacttacttcttactctattattatcactatttaacatttaccactaattatgattacttgattcatttttggcacacacaggttgaaaa |
200 |
Q |
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| T |
37232128 |
atacacaaggtacttacttcttactctattattatcactatt-aacatttaccactaattatgattacttgattaatttttggcacacacaggttgaaaa |
37232226 |
T |
|
| Q |
201 |
ggtgactaatgatatggaggaattagaatcattcgttgaacccttaattgacaagattgtgaagaaacaaagttgaaacaactgattccaaatcaaaata |
300 |
Q |
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| T |
37232227 |
ggtgactaatgatatggaggaattagaatcattcgttgaacccttaattgacaagattgtgaagaaacaaagttgaaacaactcattccaaatcaaaata |
37232326 |
T |
|
| Q |
301 |
tcatttgtacattattgtttggttgtaattaacatagtacttgtgtatgaaagaaattaccaaacaaaattgaaattatttttccttgttcagttttcaa |
400 |
Q |
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| T |
37232327 |
tcatttgtacattattgtttggttgtaattaacatagtacttgtgtatgaaagaaattaccaaacaaaattgaaattatttgtccttgttcagttttcaa |
37232426 |
T |
|
| Q |
401 |
ttctgtatgggaatattaacttttttggttatcaaattcattaaaaatataagaattatttttaagataaacaaatgtaagtccaaacaatgatcgacaa |
500 |
Q |
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| T |
37232427 |
ttctgtatgggaatattaacttttttggttatcaaattctttaaaaatattcgaattatttttaagataaacaaatgtaagtctaaacaatgatcgacaa |
37232526 |
T |
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| Q |
501 |
taatatgtataat |
513 |
Q |
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||||||| ||||| |
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| T |
37232527 |
taatatgaataat |
37232539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 506 - 632
Target Start/End: Original strand, 37232557 - 37232683
Alignment:
| Q |
506 |
tgtataattaaattaatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaaggaaaatagttctcacgatcagtgtaaattcgt |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37232557 |
tgtataattaaattaatagaatgaatgaatcgtagtcacacagatcgaaacagggcaacaacaaaaaggaaaatagttctcacgatctgtgtaaattcgt |
37232656 |
T |
|
| Q |
606 |
gataagaaaaagaacaaaataaactaa |
632 |
Q |
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| T |
37232657 |
gataagaaaaagaacataataaactaa |
37232683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 608
Target Start/End: Original strand, 37252799 - 37252891
Alignment:
| Q |
519 |
taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaagg---aaaatagttctcacgatcagtgtaaattcgtgat |
608 |
Q |
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| T |
37252799 |
taatcgaatgaataaatcgtcgtcgcacagatcgaaacagagaaacaacaaaaaggtacatagtagttctcacgatccatgtaaattcgtgat |
37252891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 37237486 - 37237539
Alignment:
| Q |
519 |
taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaa |
572 |
Q |
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|||| |||||||||||| || |||||||||| |||||||| ||||||||||||| |
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| T |
37237486 |
taattgaatgaatgaattgtcgtcacacggaccgaaacagagcaacaacaaaaa |
37237539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 37240103 - 37240164
Alignment:
| Q |
49 |
tgaaagtgcatcaaaacaagctgttcatggtgctcaaataacagaagaattcatacacaagg |
110 |
Q |
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| T |
37240103 |
tgaaagtgcatcaaaacatgttgttcatggtgcataactaacagtagaattcacacacaagg |
37240164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 566
Target Start/End: Original strand, 37256943 - 37256990
Alignment:
| Q |
519 |
taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaa |
566 |
Q |
| |
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||||| ||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
37256943 |
taataaaatgaatgaatggtagtcacacagatcgaaacagagcaacaa |
37256990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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