View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_high_4 (Length: 622)
Name: NF11266_high_4
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Complemental strand, 25883137 - 25882617
Alignment:
| Q |
17 |
actatcattcaactctcatcatgaaagaaatagtgccctctcttctcacaaacctgctactctgctatgaaggtgagtgtaaaaatggaggttaagcctc |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883137 |
actatcattcacctctcatcatgaaagaaatagtgccctctcttctcacaaacctgctactctgctatgaaggtgagtgtaaaaatggaggttaagcctc |
25883038 |
T |
|
| Q |
117 |
ttcatgaacaaatgcatcaaatgaaatcaatgacccaaaagcaaaatcagaaagagatacatacaaacaaacataaacacaaaatgtaaaggaattgatt |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883037 |
ttcatgaacaaatgcaacaaatgaaatcaatgacccaaaagcaaaatcagaaagagatacatacaaacaaacataaacacaaaatgtaaaggaattgatt |
25882938 |
T |
|
| Q |
217 |
gaactgattacctctaagagcattagccaaattgccattagaaacaaaatcactgatcaaaagcttttcatcatgagcccaataataagctcttaactta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25882937 |
gaactgattacctctaagagcattagccaaattgccattagaaacaaaatcactaatcaaaagcttttcatcatgagcccaataataagctcttaactta |
25882838 |
T |
|
| Q |
317 |
acaatattaggatgtttcactttcccaattgcttgaacttcagtagcaaattccttatacctttgttcaccaccttcccctaatctcctcacagctacag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25882837 |
acaatattaggatgtttcactttcccaattgcttgaacttcagtagcaaattccttatacctttgttcaccaccttcccccaatctcctcacagctacag |
25882738 |
T |
|
| Q |
417 |
gtaccccattcccaagcactaccttatacacaatccctaacccacttttccctaacacatatgcagaagctcttaacaattcatcaagttcaaagctaaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25882737 |
gtaccccattcccaagcactaccttatacacaatccctaacccacttttccctaacacatatgcagaagcccttaacaattcatcaagttcaaagctaaa |
25882638 |
T |
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| Q |
517 |
acctttatcaattgccaccaa |
537 |
Q |
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| T |
25882637 |
acctttatcaattgccaccaa |
25882617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 244 - 537
Target Start/End: Original strand, 4031760 - 4032053
Alignment:
| Q |
244 |
caaattgccattagaaacaaaatcactgatcaaaagcttttcatcatgagcccaataataagctcttaacttaacaatattaggatgtttcactttccca |
343 |
Q |
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|||||||||||| |||| ||||||||| || | ||||||||||||||| ||||||||||||||||| ||| | |||||||||||||| || || |||||| |
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| T |
4031760 |
caaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcacaatattaggatgcttaaccttccca |
4031859 |
T |
|
| Q |
344 |
attgcttgaacttcagtagcaaattccttatacctttgttcaccaccttcccctaatctcctcacagctacaggtaccccattcccaagcactaccttat |
443 |
Q |
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|| | ||| || |||| |||| ||||||||| | | ||| ||||| ||||||||||||||||| || || || | |||||| |||||||| ||||||| |
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| T |
4031860 |
atggtttgcacctcagctacaaactccttatacttctcttctccaccctcccctaatctcctcaccgccaccggcatcccatttccaagcaccaccttat |
4031959 |
T |
|
| Q |
444 |
acacaatccctaacccacttttccctaacacatatgcagaagctcttaacaattcatcaagttcaaagctaaaacctttatcaattgccaccaa |
537 |
Q |
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||||||||||||| |||| ||||||||||||||||| || || | || | |||||||| |||| ||||||||||| ||||||| |||||| |
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| T |
4031960 |
acacaatccctaatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacctttgtcaattgtcaccaa |
4032053 |
T |
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