View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_10 (Length: 448)
Name: NF11266_low_10
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 1453235 - 1453663
Alignment:
| Q |
1 |
ggaacaattgaggagcaacacttttttagatgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccacgtaaccaaggttgtc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1453235 |
ggaacaattgaggagcaacacttttttagatgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtg |
1453334 |
T |
|
| Q |
101 |
gctgcaccaccatgcgttggatcgaactcagacttctgtcaaacataaccatagatgaatcatacccaagctaaacaaaataactataaactcagaatta |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
1453335 |
gctgcaccaccatgcgttggatcgaacttagacttctgtcaaacataaccatagatgaatcatacacaagctaaacaaaataacaataaactcagaatta |
1453434 |
T |
|
| Q |
201 |
aggattaattctataaagtaacagaaagtgagtaatgtatcatcaaatagaaaaatataaagttaataccatgaattaacatgaagctataaagtcagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1453435 |
aggattaattctataaagtaacagaaagtgagtaatgtatcatcaaatagaaaaatataaagttaataccatgaattaacatgaagctataaagtcagca |
1453534 |
T |
|
| Q |
301 |
tcaaaaactagaaacaacataaataaacagaataacagaagaaaacgtatttggagaatatttgagagtcaacataggaaagcaataaggttaaggtgat |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1453535 |
tcaaaaactagaaacaacataaataaatagaataacagaagaaaacgtatttggagaatattcgagagtcaacataggaaagcaataaggttaaggtgat |
1453634 |
T |
|
| Q |
401 |
gtgagactctcaacgtagacattagaggt |
429 |
Q |
| |
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| T |
1453635 |
gtgagactctcaacgtagacattagaggt |
1453663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 1464927 - 1465355
Alignment:
| Q |
1 |
ggaacaattgaggagcaacacttttttagatgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccacgtaaccaaggttgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1464927 |
ggaacaattgaggagcaacacttttttagatgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtg |
1465026 |
T |
|
| Q |
101 |
gctgcaccaccatgcgttggatcgaactcagacttctgtcaaacataaccatagatgaatcatacccaagctaaacaaaataactataaactcagaatta |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
1465027 |
gctgcaccaccatgcgttggatcgaacttagacttctgtcaaacataaccatagatgaatcatacacaagctaaacaaaataacaataaactcagaatta |
1465126 |
T |
|
| Q |
201 |
aggattaattctataaagtaacagaaagtgagtaatgtatcatcaaatagaaaaatataaagttaataccatgaattaacatgaagctataaagtcagca |
300 |
Q |
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| T |
1465127 |
aggattaattctataaagtaacagaaagtgagtaatgtatcatcaaatagaaaaatataaagttaataccatgaattaacatgaagctataaagtcagca |
1465226 |
T |
|
| Q |
301 |
tcaaaaactagaaacaacataaataaacagaataacagaagaaaacgtatttggagaatatttgagagtcaacataggaaagcaataaggttaaggtgat |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1465227 |
tcaaaaactagaaacaacataaataaatagaataacagaagaaaacgtatttggagaatattcgagagtcaacataggaaagcaataaggttaaggtgat |
1465326 |
T |
|
| Q |
401 |
gtgagactctcaacgtagacattagaggt |
429 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
1465327 |
gtgagactctcaacgtagacattagaggt |
1465355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 370570 - 370609
Alignment:
| Q |
388 |
aggttaaggtgatgtgagactctcaacgtagacattagag |
427 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |
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| T |
370570 |
aggtcaaggtgatatgagactctcaacgtagacattagag |
370609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
| Q |
353 |
ggagaatatttgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacat |
422 |
Q |
| |
|
||||||| |||||||| || || || ||||||| |||| |||||||| ||||||||||||| ||||||| |
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| T |
176668 |
ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat |
176599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 1441673 - 1441746
Alignment:
| Q |
196 |
aattaaggattaattctataaagtaacagaaagtgagtaatgtatcatc-aaatagaaaaatataaagttaata |
268 |
Q |
| |
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|||||||||||||||| ||||| ||||||| | ||||||| |||||||| |||||| ||||| | |||||||| |
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| T |
1441673 |
aattaaggattaattccataaactaacagacactgagtaacgtatcatcgaaatagtgaaataaagagttaata |
1441746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 41705074 - 41705169
Alignment:
| Q |
31 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccacgtaaccaaggttgtcgctgcaccaccatgcgttggatcgaa |
126 |
Q |
| |
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|||||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||| || |||||| |||||| || ||||||||| |
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| T |
41705074 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaa |
41705169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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