View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_14 (Length: 384)
Name: NF11266_low_14
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 32600748 - 32601133
Alignment:
| Q |
1 |
ggagtttgatatacttgtaatgatcttaagtttaacatgcataacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatg |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32600748 |
ggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccattccatcctccaggtccagcataagatg |
32600847 |
T |
|
| Q |
101 |
cccatttgtcatttacatctattatagaagtcatgct-agggatggaataaagttagttggtcataatataagaaaatgaagaaaataattgannnnnnn |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600848 |
cccatttgtcatttacatctattatagaagtcatgctaagggatggaataaagttagttggtcataatataagaaaatgaagaaaataattgattttttt |
32600947 |
T |
|
| Q |
200 |
nactattccagttataatattaagtttactcgaagaaaatg-----------nnnnnnnnnntgaagaaaataagtgagttatcatattaattttaccta |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32600948 |
tactattccagttataatattaagtttactcgaagaaaatgaaaaaaaaaatatgaagaaaatgaagaaaataagtgagttatcatattaattttaccta |
32601047 |
T |
|
| Q |
289 |
ttccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatg |
374 |
Q |
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| T |
32601048 |
ttccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgtagcaggatcttcccatcccctatg |
32601133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 32590300 - 32590489
Alignment:
| Q |
1 |
ggagtttgatatacttgtaatgatcttaagtttaacatgcataacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatg |
100 |
Q |
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|||||||||| |||||||||||||||||| ||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32590300 |
ggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttaattaattaccattccatcctccaggtccagcataagatg |
32590399 |
T |
|
| Q |
101 |
cccatttgtcatttacatctattatagaagtcatgctagggatggaataaagttagttggtcataatataagaaaatgaagaaaataattg |
191 |
Q |
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||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32590400 |
cccatttatcgtttacatctattatagaagtcatcctaggga-ggaataaagttagttggtcataatataggaaaatgaagaaaataattg |
32590489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 374
Target Start/End: Original strand, 32590551 - 32590662
Alignment:
| Q |
263 |
gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttc |
362 |
Q |
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|||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32590551 |
gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
32590650 |
T |
|
| Q |
363 |
ccatcccctatg |
374 |
Q |
| |
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| ||||||||| |
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|
| T |
32590651 |
ctttcccctatg |
32590662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 24883595 - 24883555
Alignment:
| Q |
67 |
ttaccattccatcctccaggtccagcataagatgcccattt |
107 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
24883595 |
ttaccattccatcctccaggtccagcgtaagaagcccattt |
24883555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
284 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacact |
338 |
Q |
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|||||| ||| |||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 34578060 - 34578196
Alignment:
| Q |
1 |
ggagtttgatatacttgtaatgatcttaagtttaacatgcataacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34578060 |
ggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccattccatcctccaggtccagcataagatg |
34578159 |
T |
|
| Q |
101 |
cccatttgtcatttacatctattatagaagtcatgct |
137 |
Q |
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|||||||||| ||| ||||||| |||||||||||||| |
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| T |
34578160 |
cccatttgtcgtttgcatctataatagaagtcatgct |
34578196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 34594089 - 34594181
Alignment:
| Q |
282 |
ttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatg |
374 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
34594089 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg |
34594181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 34578391 - 34578478
Alignment:
| Q |
284 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccct |
371 |
Q |
| |
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|||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccct |
34578478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 34593907 - 34593991
Alignment:
| Q |
58 |
gttagttaattaccattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgctaggga |
142 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||| |||||||||||||||||||| |
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| T |
34593907 |
gttaattaattaccattccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctaggga |
34593991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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