View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_15 (Length: 367)
Name: NF11266_low_15
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 4181918 - 4181578
Alignment:
| Q |
18 |
aagataaactataacaaacctaagttatttatgaactaagagggcttgaaaatttaaattctgttttggattaacaatgcattgatgaatgagagttctt |
117 |
Q |
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| T |
4181918 |
aagataaactataacaaacctaagttacttatgaactgagagggcttgaaaatttaaattctgttttggattaacaatgcattgatgaatgagagttctt |
4181819 |
T |
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| Q |
118 |
aattacacctcatgagttgtaacaannnnnnnnnncttttcactttatgatacaaccacatagcatatacgagattattagtcattgtcctccaaaattg |
217 |
Q |
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| T |
4181818 |
aattacacctcatgagttgtaacaatttttt-----ttttcactttatgatacaaccacatagcatatacgagattatgagtcattgtcctccaaaattg |
4181724 |
T |
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| Q |
218 |
ccaacattcacctatgtcaaatatcaattgtgctgttggatacttcttgctg--nnnnnnnngtgttcttattttcttgttgcttcatgttgctcatatt |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
4181723 |
ccaacattcacctatgtcaaatatcatttgtgctgttggatacttcttgctgttttttttttgtgttcttattttcttgttgcttcatgttgctcatgtt |
4181624 |
T |
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| Q |
316 |
tacataactgatttgtggcatttggctagtgttgtttctctgcttc |
361 |
Q |
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| T |
4181623 |
tacataactgatttgtggcatttggctagtgttgtttctgtgcttc |
4181578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 4098411 - 4098467
Alignment:
| Q |
303 |
tgttgctcatatttacataactgatttgtggcatttggctagtgttgtttctctgct |
359 |
Q |
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| T |
4098411 |
tgttgctcatgtttacataacttctccgtggcatttggctagtattgtttctatgct |
4098467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 6883848 - 6883929
Alignment:
| Q |
279 |
tgttcttattttcttgttgcttcatgttgctcatatttacataactgatttgtggcatttggctagtgttgtttctctgctt |
360 |
Q |
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| T |
6883848 |
tgtttttattttcgttttgtttcttgttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgctt |
6883929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 38581035 - 38581109
Alignment:
| Q |
286 |
attttcttgttgcttcatgttgctcatatttacataactgatttgtggcatttggctagtgttgtttctctgctt |
360 |
Q |
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| T |
38581035 |
attttcgtgttgtttctcgttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgctt |
38581109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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