View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_17 (Length: 347)
Name: NF11266_low_17
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 51037019 - 51037347
Alignment:
| Q |
1 |
tcctgcgcacgttcaccatggtaacgagaatcaactgaaattgctatatatccccgcgaagcatatgcctgaaacaagaagcacaaaaatagaaaccaaa |
100 |
Q |
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| T |
51037019 |
tccttcgcacgttcaccatggtaacgagaatcaactgaaattgctatatatccccgcgaagcatatgcctgaaacaagaagcacaaaaatagaaaccaaa |
51037118 |
T |
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| Q |
101 |
gacaaattaaatccacaatataataattaaacaatcacaaatcttatttcataggagttgaacaaaatgagcaatgagtgaagcagtgaaaatgcggtat |
200 |
Q |
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| T |
51037119 |
gacaaattaaatccacaatataataattaaacaatcacaaatcttatttcataggagttgaacaaaatgagcaatgagtgaagcagtgaaaatgcggtat |
51037218 |
T |
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| Q |
201 |
aataacctcaagcaatggacgcagagattctttatgcgaatttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaag |
300 |
Q |
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| T |
51037219 |
aataacctcaagcaatggacgcagagattctttatgcgaatttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaag |
51037318 |
T |
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| Q |
301 |
ctcaaaatcaatacaggcagccatccttg |
329 |
Q |
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| T |
51037319 |
ctcaaaatcaatacaggcagccatccttg |
51037347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 51044922 - 51045247
Alignment:
| Q |
7 |
gcacgttcaccatggtaacgagaatcaactgaaattgctatatatccccgcgaagcatatgcctgaaacaagaagcacaaaaatagaaaccaaagacaaa |
106 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||| |||| |
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| T |
51044922 |
gcacgttcaccatggtaacgagaatcaaccgaaattgttatatatcctcgcgaagcatatgcctgaaacacgaagaccaaaaatggaaaccaaagccaaa |
51045021 |
T |
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| Q |
107 |
ttaaatccacaat-ataataat-taaacaatcac---aaatcttatttcataggagttgaacaaaatgagcaatgagtgaagcagtgaaaatgcggtata |
201 |
Q |
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| T |
51045022 |
a-aaattgacgattattataagctaatgaatcatgataaatcatatttcataggagtagaacaaaatgagtgatgattgaagctgagaaaatgtagta-a |
51045119 |
T |
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| Q |
202 |
ataacctcaagcaatggacgcagagattctttatgcgaatttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaagc |
301 |
Q |
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|||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51045120 |
gcaacctcaagcaacggacgcagatattctttatacttgtttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaagc |
51045219 |
T |
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| Q |
302 |
tcaaaatcaatacaggcagccatccttg |
329 |
Q |
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|||||||||| ||||||| || |||||| |
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| T |
51045220 |
tcaaaatcaacacaggcaaccgtccttg |
51045247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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