View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11266_low_2 (Length: 832)

Name: NF11266_low_2
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11266_low_2
NF11266_low_2
[»] chr1 (11 HSPs)
chr1 (446-818)||(26791439-26791810)
chr1 (18-346)||(26790999-26791322)
chr1 (595-818)||(26822488-26822711)
chr1 (561-818)||(26785811-26786070)
chr1 (593-826)||(26832563-26832796)
chr1 (166-344)||(26784944-26785117)
chr1 (222-344)||(26817885-26818007)
chr1 (18-133)||(26784673-26784787)
chr1 (177-344)||(26831581-26831757)
chr1 (681-826)||(41546210-41546355)
chr1 (18-65)||(26831377-26831424)
[»] chr7 (2 HSPs)
chr7 (221-326)||(41919483-41919588)
chr7 (594-821)||(41917439-41917666)
[»] chr4 (1 HSPs)
chr4 (221-337)||(20237292-20237408)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 446 - 818
Target Start/End: Original strand, 26791439 - 26791810
Alignment:
Q  446 tgtgctcatcatgttcttat-tattattgaccaacgattattgcatctttctttataattattctacatttatcgcacccacagacatattatgtattcg 544  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26791439 tgtgttcatcatattcttatatattagtgaccaacgattattgcatctttctttataattattctacatttatcgcacccgcagacatattatgtattcg 26791538  T
Q  545 ggtttcatatattaaagttaatgcgattcttgaagaagaagaaaatgtgaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattg 644  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  26791539 ggtttcatatattaaagttaaagcgattcttgaagaagaaaaaaa-gtgaagt-accaaacttccagcgagcttgaacgagaccaatctcaggattattg 26791636  T
Q  645 acaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttca 744  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26791637 acaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttca 26791736  T
Q  745 ttccctcctttagtgcaccagctttgtacccatttctgttgtccctaacttcatattttatgttcacacctttg 818  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26791737 ttccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttg 26791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 26790999 - 26791322
Alignment:
Q  18 cttcattcaacgccaaaattctccatacaccagcagtccctatgtcatttcatttacaagaccttaaacattgacagtaatgtaatgtaaattattcatc 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26790999 cttcattcaacgccgaaattctccatacaccagcagtccctatgtcatttcatttacaggaccttaaacattgacagtaatgtaatgtaaattattcatc 26791098  T
Q  118 atgccacatcccaacataccacaagaaaacatgaaactacttcaactattctatttgaaaaggaaaattgatgaaattgttttaggcatgagatgagatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||      
T  26791099 atgccacatcccaacataccacaagaaaacatgaaactacttcaactattctttttgaaaaggaaaattgatgaaattgttttaggcatgaggtgaga-- 26791196  T
Q  218 aggttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcatta 317  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26791197 ---ttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcatta 26791293  T
Q  318 aacattcatttgcattcactaaaaacata 346  Q
    |||||||||||||||||||||||||||||    
T  26791294 aacattcatttgcattcactaaaaacata 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 595 - 818
Target Start/End: Original strand, 26822488 - 26822711
Alignment:
Q  595 aattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatc 694  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||    
T  26822488 aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc 26822587  T
Q  695 agcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaact 794  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26822588 agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact 26822687  T
Q  795 tcatattttatgttcacacctttg 818  Q
    ||||| ||||||||||||||||||    
T  26822688 tcatactttatgttcacacctttg 26822711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 561 - 818
Target Start/End: Original strand, 26785811 - 26786070
Alignment:
Q  561 gttaatgcgattcttgaagaagaag--aaaatgtgaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggat 658  Q
    |||||||||||||| ||||||  ||  |||| | | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||    
T  26785811 gttaatgcgattctagaagaattagggaaaaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaat 26785910  T
Q  659 ggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagt 758  Q
    |||| ||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  26785911 ggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttaga 26786010  T
Q  759 gcaccagctttgtacccatttctgttgtccctaacttcatattttatgttcacacctttg 818  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26786011 gcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttg 26786070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 593 - 826
Target Start/End: Original strand, 26832563 - 26832796
Alignment:
Q  593 gaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaa 692  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||    |||||||| ||||| |||||||||    
T  26832563 gaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaa 26832662  T
Q  693 tcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaa 792  Q
    |||||||||||||| |||||||| |||||||||   |||| ||||||||||||||||||||||| |||||| |||||||| |||||||| ||||||||||    
T  26832663 tcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaa 26832762  T
Q  793 cttcatattttatgttcacacctttgcttctcca 826  Q
    ||||||| ||||| ||||||||||||||||||||    
T  26832763 cttcatactttatattcacacctttgcttctcca 26832796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 166 - 344
Target Start/End: Original strand, 26784944 - 26785117
Alignment:
Q  166 ttctatttgaaaaggaaaattgatgaaattgttttaggcatgagatgagattaggttaccattgaagccaaagaaggcataagtggaagaccctacttct 265  Q
    |||| |||||| ||||||||  |||||||||||||||| ||| ||||     || ||||||||||||||||||||||||||||| |||||||| ||||||    
T  26784944 ttctttttgaagaggaaaatgcatgaaattgttttaggaatgtgatg-----agcttaccattgaagccaaagaaggcataagtagaagaccccacttct 26785038  T
Q  266 tgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaacattcatttgcattcactaaaaaca 344  Q
    ||||| ||| ||||||| |||||||||||||| | ||||||||||||||| ||||||||||| ||||| ||||||||||    
T  26785039 tgttcaaccgtaaaatgataatcaagtgacatcttttgcatcctcgtcatcaaacattcattcgcatttactaaaaaca 26785117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 26817885 - 26818007
Alignment:
Q  222 taccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaaca 321  Q
    |||||||||||||||||||||| |||| |||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26817885 taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatgataatcgagtgacatttgttgcatcctcgtcatcaaaca 26817984  T
Q  322 ttcatttgcattcactaaaaaca 344  Q
    ||| || ||||||||| ||||||    
T  26817985 ttcgttcgcattcactgaaaaca 26818007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 26784673 - 26784787
Alignment:
Q  18 cttcattcaacgccaaaattctccatacaccagcagtccctatgtcatttcatttacaagaccttaaacattgacagtaatgtaatgtaaattattcatc 117  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| |  ||| |||||| ||||||||||||||||||||||||    
T  26784673 cttcattcaacgccgaaattctccacacacccgcagtccctatgtcatttcattttcaagaacacaaa-attgactgtaatgtaatgtaaattattcatc 26784771  T
Q  118 atgccacatcccaaca 133  Q
    |||||||| |||||||    
T  26784772 atgccacaacccaaca 26784787  T

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Target: chr1; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 177 - 344
Target Start/End: Original strand, 26831581 - 26831757
Alignment:
Q  177 aaggaaaattgatgaaattgttttaggcatgagatgagattaggtta---------ccattgaagccaaagaaggcataagtggaagaccctacttcttg 267  Q
    ||||||||| ||||||| |||||||| |||| ||||||||||| |||         || ||||||||||||||||| |||| |||||| || ||||||||    
T  26831581 aaggaaaatggatgaaactgttttagccatgcgatgagattagattaggggttttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttg 26831680  T
Q  268 ttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaacattcatttgcattcactaaaaaca 344  Q
    ||| ||  ||||||| ||||  |||||||| | ||||||||| ||||||||||||||||  ||||||||||||||||    
T  26831681 ttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaacattcatccgcattcactaaaaaca 26831757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 681 - 826
Target Start/End: Complemental strand, 41546355 - 41546210
Alignment:
Q  681 tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttc 780  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||  ||||| |||||| |||||||| || || || |||||||||||||| |||||||    
T  41546355 tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc 41546256  T
Q  781 tgttgtccctaacttcatattttatgttcacacctttgcttctcca 826  Q
    | || ||||| |  ||||| |||||||| |  ||||| ||||||||    
T  41546255 tattttcccttatctcatactttatgtttatgccttttcttctcca 41546210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 26831377 - 26831424
Alignment:
Q  18 cttcattcaacgccaaaattctccatacaccagcagtccctatgtcat 65  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  26831377 cttcattcaacgccgaaattctccatacacccgcagtccctgtgtcat 26831424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 41919588 - 41919483
Alignment:
Q  221 ttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaac 320  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||| | |||||| || ||||| | ||    
T  41919588 ttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcatcatac 41919489  T
Q  321 attcat 326  Q
    ||||||    
T  41919488 attcat 41919483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 594 - 821
Target Start/End: Complemental strand, 41917666 - 41917439
Alignment:
Q  594 aaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaat 693  Q
    ||||||||||| ||||| ||||||||||  || ||||| ||||||||||  || | ||| || | ||| ||    | |||||| || || ||||||||||    
T  41917666 aaattaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaat 41917567  T
Q  694 cagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaac 793  Q
    |||||||||| || |||||||  ||||||||    |||| |||||| |||||||| || ||||  || || |||||||| |||||||| |||||||||||    
T  41917566 cagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaac 41917467  T
Q  794 ttcatattttatgttcacacctttgctt 821  Q
    |||||| ||||| ||||| |||||||||    
T  41917466 ttcatactttatattcactcctttgctt 41917439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 337
Target Start/End: Original strand, 20237292 - 20237408
Alignment:
Q  221 ttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaac 320  Q
    |||||||||||||||||||| |||| ||| |  || || |||||||| || ||  | ||||||||||| |  ||||| | |||||| || ||||  ||||    
T  20237292 ttaccattgaagccaaagaaagcatgagtagctgatccaacttcttgctcaactgtgaaatggtaatccaaagacatctcttgcattcttgtcaacaaac 20237391  T
Q  321 attcatttgcattcact 337  Q
    |||||||||||||||||    
T  20237392 attcatttgcattcact 20237408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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