View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11266_low_22 (Length: 300)
Name: NF11266_low_22
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 32514822 - 32515090
Alignment:
| Q |
16 |
tgaatcaccaaagcatcaaaaccaacggaataaatatacatgtagcagaacaaggaacaggaccacttgttctactccttcatggtttcccagaaatatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32514822 |
tgaatcaccaaagcatcaaaaccaacggaataaatatacatgtagcagaacaaggaacaggaccactagttctactccttcatggtttcccagaaatatg |
32514921 |
T |
|
| Q |
116 |
gtattcttggcgccatcaactaaactatttggcccaaaatggttatcatgctgttgcacctgatctaagaggatatggtgactctgattctcctatcaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32514922 |
gtattcttggcgccatcaactaaactatttggcccaaaatggttatcatgctgttgcacctgatctaagaggatatggtgactctgattctcctatcaac |
32515021 |
T |
|
| Q |
216 |
tccgattcctacactcttcaccacatcgtaggtgaccttattggtcttcttgatcattttggtgaacat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32515022 |
tccgattcctacactcttcaccacatcgtaggtgaccttattggtcttcttgatcattttggtgaacat |
32515090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University