View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11266_low_23 (Length: 290)

Name: NF11266_low_23
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11266_low_23
NF11266_low_23
[»] chr5 (10 HSPs)
chr5 (13-290)||(10548954-10549231)
chr5 (19-287)||(10557084-10557352)
chr5 (16-150)||(19607639-19607773)
chr5 (13-150)||(9838099-9838236)
chr5 (96-160)||(10718752-10718816)
chr5 (99-290)||(10748872-10749063)
chr5 (96-134)||(10764951-10764989)
chr5 (21-142)||(10594067-10594188)
chr5 (100-193)||(10609968-10610061)
chr5 (240-290)||(19607863-19607913)
[»] chr6 (4 HSPs)
chr6 (111-158)||(12897858-12897905)
chr6 (111-158)||(12905479-12905526)
chr6 (96-156)||(12946936-12946996)
chr6 (111-147)||(12956382-12956418)
[»] chr2 (1 HSPs)
chr2 (111-147)||(17925275-17925311)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 10549231 - 10548954
Alignment:
Q  13 gagatcatagtaagagatgacatattgtagagacacaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgac 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549231 gagatcatagtaagagatgacatattgtaaagacacaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgac 10549132  T
Q  113 atatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatggagggactcttccagtcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549131 atatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatggagggactcttccagtcaa 10549032  T
Q  213 aaggtttcgtgtaacactaaattgtttaagcttttgaagagacccaatttcaattggtatttttccaatcaaattgtt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549031 aaggtttcgtgtaacactaaattgtttaagcttttgaagagacccaatttcaattggtatttttccaatcaaattgtt 10548954  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 10557352 - 10557084
Alignment:
Q  19 atagtaagagatgacatattgtagagacacaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgacatattt 118  Q
    |||| |||||||||||| ||||| |||||  |||||| ||||||||||| |||||||| | ||| | | ||    | ||||| ||| || ||||||||||    
T  10557352 atagcaagagatgacatgttgtaaagacatgaaggaactgtaccagatagtttgttgagccccaatgctattttagtcaagtgttttaggcgacatattt 10557253  T
Q  119 cttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatggagggactcttccagtcaaaaggtt 218  Q
    |||| |||||||||||||| || ||||||  |||||  |||| |  | | ||   ||||||||| |||| |||||| ||||||| |||  |||||  |||    
T  10557252 cttggggaatatctccctctaagttgttacgagaaatggaaagagttgttaagactgaaagattacctatgaatggtgggactcctccgatcaaactgtt 10557153  T
Q  219 tcgtgtaacactaaattgtttaagcttttgaagagacccaatttcaattggtatttttccaatcaaatt 287  Q
    || |  |||| | |||| || ||||||||||||||| || |||||||||||||||||||| ||||||||    
T  10557152 tcttccaacattcaattcttgaagcttttgaagagagcctatttcaattggtatttttccgatcaaatt 10557084  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 19607639 - 19607773
Alignment:
Q  16 atcatagtaagagatgacatattgtagagacacaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgacata 115  Q
    |||||||||||||||||||||||| | |||||  |||||||||||||||||| |||||||   | |||||  ||| ||| |||||||||||| ||||| |    
T  19607639 atcatagtaagagatgacatattgaaaagacaagaaggaaatgtaccagataatttgttgtgaaacattattatccctgtcaagtttttgaggcgacaaa 19607738  T
Q  116 tttcttgtggaatatctccctccaaattgttataa 150  Q
     |||||  ||||||| ||||||||| |||||||||    
T  19607739 cttctttcggaatatttccctccaagttgttataa 19607773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 9838099 - 9838236
Alignment:
Q  13 gagatcatagtaagagatgacatattgtagagacacaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgac 112  Q
    |||||||  ||||||||||||||||||||||||||    ||||||||||| |||| ||||||| |   || |   || | |  ||||||||| || ||||    
T  9838099 gagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttgtcagtcactgttattattatcaagttttttaggcgac 9838198  T
Q  113 atatttcttgtggaatatctccctccaaattgttataa 150  Q
    |||||||| |||||||||||||||| ||||| ||||||    
T  9838199 atatttctcgtggaatatctccctctaaattattataa 9838236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 10718752 - 10718816
Alignment:
Q  96 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaa 160  Q
    ||||||||||||||||||||||||| |||||||| |||| || || |||||||||| ||| ||||    
T  10718752 caagtttttgagacgacatatttctggtggaataactccgtctaagttgttataaggaaccgaaa 10718816  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 10748872 - 10749063
Alignment:
Q  99 gtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatggaggg 198  Q
    ||||||||||  |||||||||||||||||| |||||||  || |||||||| | ||| | ||  ||||| ||  ||||||||||||||| ||||| |||     
T  10748872 gtttttgagattacatatttcttgtggaatctctccctttaagttgttatatgtaaccgcaatccctattaaggatgaaagattccctatgaatgaagga 10748971  T
Q  199 actcttccagtcaaaaggtttcgtgtaacactaaattgtttaagcttttgaagagacccaatttcaattggtatttttccaatcaaattgtt 290  Q
    | ||  ||||| |||  |||||    |||| | | | ||| ||||||||  | ||| |||||||||||||||||||| ||||||| ||||||    
T  10748972 aatccaccagttaaattgtttccccaaacatttattagttgaagctttttcaaagagccaatttcaattggtattttgccaatcacattgtt 10749063  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 10764951 - 10764989
Alignment:
Q  96 caagtttttgagacgacatatttcttgtggaatatctcc 134  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  10764951 caagtttttgaggcgacatatttcttgtggaatatctcc 10764989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 10594188 - 10594067
Alignment:
Q  21 agtaagagatgacatattgtagagacacaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgacatatttct 120  Q
    ||||||||||| ||||||||  |||||    ||||||||||||||||  ||||| ||   || || ||| | || ||||||||| ||| |||||||||||    
T  10594188 agtaagagatgtcatattgtgaagacaaggtggaaatgtaccagataggttgttcacaggcagtaacattattgtcaagtttttaagatgacatatttct 10594089  T
Q  121 tgtggaatatctccctccaaat 142  Q
    ||||||||||| ||||| ||||    
T  10594088 tgtggaatatcaccctctaaat 10594067  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 10610061 - 10609968
Alignment:
Q  100 tttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatg 193  Q
    ||||||||||||||| |||||||||||||||| || || || |||||  ||| |||||||||||   | ||  ||||||||||||||| |||||    
T  10610061 tttttgagacgacatgtttcttgtggaatatccccttctaagttgtttgaagtaactgaaaaacgcgttaagcatgaaagattccctacgaatg 10609968  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 19607863 - 19607913
Alignment:
Q  240 aagcttttgaagagacccaatttcaattggtatttttccaatcaaattgtt 290  Q
    |||||||||||||||    ||||||||||| ||||||||||||||||||||    
T  19607863 aagcttttgaagagaggtgatttcaattgggatttttccaatcaaattgtt 19607913  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 12897905 - 12897858
Alignment:
Q  111 acatatttcttgtggaatatctccctccaaattgttataagaaactga 158  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||||    
T  12897905 acatatttcttgtggaatatctccctcaaaattgttttcagaaactga 12897858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 12905526 - 12905479
Alignment:
Q  111 acatatttcttgtggaatatctccctccaaattgttataagaaactga 158  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||||    
T  12905526 acatatttcttgtggaatatctccctcaaaattgttaccagaaactga 12905479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 12946996 - 12946936
Alignment:
Q  96 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaact 156  Q
    ||||| |||||||  |||||||||||||||||| |||||||| |||||||| | |||||||    
T  12946996 caagtgtttgagaaaacatatttcttgtggaatgtctccctcaaaattgttttcagaaact 12946936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 12956418 - 12956382
Alignment:
Q  111 acatatttcttgtggaatatctccctccaaattgtta 147  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12956418 acatatttcttgtggaatatctccctcaaaattgtta 12956382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 17925275 - 17925311
Alignment:
Q  111 acatatttcttgtggaatatctccctccaaattgtta 147  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17925275 acatatttcttgtggaatatctccctcaaaattgtta 17925311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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