View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_25 (Length: 242)
Name: NF11266_low_25
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 29147306 - 29147518
Alignment:
| Q |
17 |
agagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttacaaagggaaggaattttatattggtcat---catcatcatc |
113 |
Q |
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| T |
29147306 |
agagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttacaaagggaaggaattttatattggtcatcatcatcatcatc |
29147405 |
T |
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| Q |
114 |
atagtcaccattctgctgagattagtgctgttgcagcacacaaaactcacatgtttcgtggcactttctttttggttggagcatgctgttcttacactgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147406 |
atagtcaccattctgctgagattagtgctgttgcagcacacaaaactcgcatgtttcgtggcactttctttttggttggagcatgctgttcttacactgc |
29147505 |
T |
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| Q |
214 |
ttggtttattctt |
226 |
Q |
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||||||||||||| |
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| T |
29147506 |
ttggtttattctt |
29147518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 29224381 - 29224163
Alignment:
| Q |
17 |
agagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttacaaagggaaggaattttatattggtcatcatcatcatcat- |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29224381 |
agagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttacaaagggaaggaattttatattggtcatcatcatcatcatc |
29224282 |
T |
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| Q |
116 |
--------agtcaccattctgctgagattagtgctgttgcagcacacaaaactcacatgtttcgtggcactttctttttggttggagcatgctgttctta |
207 |
Q |
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| T |
29224281 |
atcatcatagtcaccattctgctgagattagtgctgttgcagcacacaaaactcacatgtttcgtggcactttctttttggttggagcatgctgttctta |
29224182 |
T |
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| Q |
208 |
cactgcttggtttattctt |
226 |
Q |
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||||||||||||||||||| |
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| T |
29224181 |
cactgcttggtttattctt |
29224163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 38851867 - 38851808
Alignment:
| Q |
141 |
ctgttgcagcacacaaaactcacatgtttcgtggcactttctttttggttggagcatgct |
200 |
Q |
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| T |
38851867 |
ctgttgcagctcacaaaacacaaatgcttcgtgggactttgtttttgattggagcatgct |
38851808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 5304065 - 5303860
Alignment:
| Q |
17 |
agagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttacaaagggaaggaattttatattggtcatcatcatcatcata |
116 |
Q |
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||||| ||| |||| || || ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
5304065 |
agagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttacaaagggaaggaattttatattgg---tcctcatcatcata |
5303969 |
T |
|
| Q |
117 |
gtcaccattctgctgagattagtgctgttgcagcacacaaaactcacatgtttcgtggcactttctttttggttggagcatgctgttcttacactgcttg |
216 |
Q |
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|| ||||||||| | | ||| | |||||| |||||| |||||||| ||| ||||||| |||||||||||||||||| |||| || | |||||| ||||| |
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| T |
5303968 |
gttcccattctgcaggggttatttctgttgtagcacataaaactcatatgcttcgtggaactttctttttggttggatcatgttgcttttacacagcttg |
5303869 |
T |
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| Q |
217 |
gtttattct |
225 |
Q |
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||||||||| |
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| T |
5303868 |
gtttattct |
5303860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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