View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_26 (Length: 239)
Name: NF11266_low_26
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 10548862 - 10548652
Alignment:
| Q |
1 |
tttaattgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggttgacgtgtctgagaaaagtgagattggcgacatgag |
100 |
Q |
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| T |
10548862 |
tttaattgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggttgacgtgtctgagaaaagtgagattggcgacatgag |
10548763 |
T |
|
| Q |
101 |
aagataaagatccatgcaacttatatccaggtaactttaacgctgtaactctttgatgcacgtggttacgtgattccatgccagttgcaaaaatggatag |
200 |
Q |
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| T |
10548762 |
aagataaagatccatgcaacttatatccaggtaacttcaacgctgtaactctttgatgca--------cgtgattccatgccagttgcaaaaatggatag |
10548671 |
T |
|
| Q |
201 |
aaccattcgaagaatcaag |
219 |
Q |
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| T |
10548670 |
aaccattccaagaatcaag |
10548652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 10556987 - 10556765
Alignment:
| Q |
3 |
taattgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggttgacgtgtctgagaaaagtgagattggcgacatgagaa |
102 |
Q |
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| T |
10556987 |
taattgtaacaactgacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgtgtctgagaaaagtaagattggcagcatgagaa |
10556888 |
T |
|
| Q |
103 |
gataaagatccatgcaacttatatccaggtaactttaacgctgtaactctttgatgcacgtggtt--acgtgattccatgccagttgcaaaaatggatag |
200 |
Q |
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| T |
10556887 |
gataaggatccatgcaacttatatccaggtaacttcaactcagtaactctttgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatag |
10556788 |
T |
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| Q |
201 |
aaccattcgaagaatcaaggatt |
223 |
Q |
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| T |
10556787 |
aaccattccaagaatcaaggatt |
10556765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 9838576 - 9838685
Alignment:
| Q |
109 |
gatccatgcaacttatatccaggtaactttaacgctgtaactctttgatgcacgtggttac--gtgattccatgccagttgcaaaaatggatagaaccat |
206 |
Q |
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|||||||||||||| ||||| |||| || || ||||||||||||||||| | |||| | |||||||||||||||||||| || ||||||||| || |
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| T |
9838576 |
gatccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaat |
9838675 |
T |
|
| Q |
207 |
tcgaagaatc |
216 |
Q |
| |
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|| ||||||| |
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| T |
9838676 |
tccaagaatc |
9838685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 12946704 - 12946584
Alignment:
| Q |
7 |
tgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggttgacgtgtctg-agaaaagtgagattggcgacatgagaagat |
105 |
Q |
| |
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|||| ||||||||||||||| || || |||| || | |||| ||||||||| ||| ||||| |||| | |||||||||||||||| ||||| | |||| |
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| T |
12946704 |
tgtagcaactgacccaactcctgtggaatttctccaaagaagttgttgtctccaatgttga-gtgttttcagaaaagtgagattggaaacatggggagat |
12946606 |
T |
|
| Q |
106 |
aaagatccatgcaacttatatc |
127 |
Q |
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||||||||||| |||| ||||| |
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| T |
12946605 |
aaagatccatgtaactgatatc |
12946584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 12905249 - 12905129
Alignment:
| Q |
7 |
tgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggttgacgtgtctgagaaaagtgagattggcgacatgagaagata |
106 |
Q |
| |
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|||| |||||||||||| || || || |||| || | |||| |||||||||| || || ||| | | |||||||||||||||| ||||| | ||||| |
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| T |
12905249 |
tgtagcaactgacccaaatcctgaggaatttctccaaagaagttgttgtctgtaatgtcgacacttttcagaaaagtgagattggaaacatggggagata |
12905150 |
T |
|
| Q |
107 |
aagatccatgcaacttatatc |
127 |
Q |
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|||||||||| |||| ||||| |
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| T |
12905149 |
aagatccatgtaactgatatc |
12905129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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