View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_5 (Length: 600)
Name: NF11266_low_5
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 593
Target Start/End: Original strand, 43408677 - 43409257
Alignment:
| Q |
19 |
gattttagaagtagtcacaacatgaatatcccacaagcagtaaaggtaa---gcaaacaatca---tcagatcatagtactggatttgattaaatcaaca |
112 |
Q |
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| T |
43408677 |
gattttagaagtagtcacaacatgaatatcccacaagcagtaaaggtaattagcaaacaatcatcatcagatcatagtactggatttgattagatcaaca |
43408776 |
T |
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| Q |
113 |
aaaactaaataaaattgtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagccgtgaacgagataatggaagtgttg |
212 |
Q |
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| T |
43408777 |
aaaactatataaaattgtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagcggtgaacgagataatggaagtgttg |
43408876 |
T |
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| Q |
213 |
gcttcagtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcag |
312 |
Q |
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| T |
43408877 |
gcgtcagtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcag |
43408976 |
T |
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| Q |
313 |
gttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtga |
412 |
Q |
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| T |
43408977 |
gttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtga |
43409076 |
T |
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| Q |
413 |
gtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatattactgccttcagcaaatctgaatat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409077 |
gtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatattactgccttcagcaaatctgaatat |
43409176 |
T |
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| Q |
513 |
ccacttgctcaccatgccaacatgtttggcttacacgctgctgttgccattccattgaggagtgtctacacaggttctgct |
593 |
Q |
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| T |
43409177 |
ccacttgctcaccatgccaacatgtttggcttacacgctgctgttgccattccattgaggagtgtctacactggttctgct |
43409257 |
T |
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