View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_6 (Length: 532)
Name: NF11266_low_6
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 417
Target Start/End: Complemental strand, 11677505 - 11677114
Alignment:
| Q |
10 |
gcagagaacaaccatgagaactagacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtgcaaagat |
109 |
Q |
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| T |
11677505 |
gcagagaacaaccatgagaactagacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtgcaaagat |
11677406 |
T |
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| Q |
110 |
atttagtatgcaaactcagcagcaacatacatcagcacatacatacatcaacacatacatggttgactgattcaacaacaaactttctctaatgcttcta |
209 |
Q |
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| T |
11677405 |
atttagtgtgcaaactcagcagcaacatacatcagcacatacat----------------ggttgactgattcaacaacaaactttctctaatgcttctg |
11677322 |
T |
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| Q |
210 |
ccatcgacgggagaatattgatgtttcgtcttttaagggaggtcgctcaacctatgaaaacatgtactccagattaagtttatttccaacttgaatttgt |
309 |
Q |
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| T |
11677321 |
ccattgacgggagaatattgatgttttgtctttgaagggaggtcgctcaacctatgaaaacatgtacttaagattaagtttatttccaacttgaatttgt |
11677222 |
T |
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| Q |
310 |
tatgtttcagtgtcagatctggaaaagaaatcagcttaccagcttatacctcaggctacagttatggaattcaggtgatagagtagtaaatggggtgagg |
409 |
Q |
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| T |
11677221 |
tatgtttcagtgtcagatctggaaaagaaatcagcttaccagcttatacctcaggctacagttatggaattcaggtgatagagtagtaaatggggtgagg |
11677122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 469 - 515
Target Start/End: Complemental strand, 11677062 - 11677016
Alignment:
| Q |
469 |
cctaaaccggttaccaacctacacctgtcctggaaagggggactttt |
515 |
Q |
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| T |
11677062 |
cctaaaccggttaccaacctatacctgtcctgaaaagggggactttt |
11677016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 19473380 - 19473454
Alignment:
| Q |
28 |
aactagacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtg |
102 |
Q |
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| T |
19473380 |
aactagacgttcacataggaaaggttgttgaaatagcgataaacaagagatagtggagatgcaaattgtattgtg |
19473454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 19473337 - 19473370
Alignment:
| Q |
12 |
agagaacaaccatgagaactagacgttcacatag |
45 |
Q |
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| T |
19473337 |
agagaactaccatgagaactagacgttcacatag |
19473370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 42251476 - 42251549
Alignment:
| Q |
33 |
gacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtgcaaa |
106 |
Q |
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| T |
42251476 |
gacgttcacatagaaaaagtggtagaagtagcgataaataagagacgacggaggtgcagattgtactgtgcaaa |
42251549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 515
Target Start/End: Original strand, 5487348 - 5487387
Alignment:
| Q |
476 |
cggttaccaacctacacctgtcctggaaagggggactttt |
515 |
Q |
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| T |
5487348 |
cggttaccaacctacacctgttctggaaagggagactttt |
5487387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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