View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11266_low_7 (Length: 510)
Name: NF11266_low_7
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 14085077 - 14085571
Alignment:
| Q |
1 |
agaatatttgttaacctgttnnnnnnnnntaaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14085077 |
agaatatttgttaacctgttaaaaaaaaataaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatcaa |
14085176 |
T |
|
| Q |
101 |
agacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagtaaaagaattacct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
14085177 |
agacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaaaaatgctaaaccaatattaccctaaaagagtaaaagaatcacct |
14085276 |
T |
|
| Q |
198 |
tcatgtttttggacaaacattcatatgtttaagcatgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaatgtg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14085277 |
tcatgtttttggacaaacattcatatgtttaagcatgttgttagtttgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaattcg |
14085376 |
T |
|
| Q |
298 |
gcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcagcatgttcat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14085377 |
gcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcaacatgttcat |
14085476 |
T |
|
| Q |
398 |
gtccttggcctcgcagtaactcagcagcctcgagactccttgagttctagcaactagaattggaatttgaggcaaaggattcacactggcagtac |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14085477 |
gtccttggcctcgcagtaactcagcagcctcgagactccttgagttctagcaactagaattggaatttgaggcaaaggattcacactggcagtac |
14085571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 35 - 408
Target Start/End: Complemental strand, 12190254 - 12189888
Alignment:
| Q |
35 |
aaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatcaaagacaactatcaaaacagagtaaacatagactaa |
134 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||| ||| || ||||||||| |||||||||| ||| ||||| ||||| || ||||||||| |
|
|
| T |
12190254 |
aaaatatacattagta-ctaataaatcaaagccacaaaatataacacta--gcaaactaacatcaaagacatctaccaaaatagagttaaaatagactaa |
12190158 |
T |
|
| Q |
135 |
atcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagtaaaagaattaccttcatgtttttggacaaacattcatatgtttaagc |
231 |
Q |
| |
|
|||||||||||||||| || || | ||||| ||| || ||| | | | ||||| || |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
12190157 |
atcaaatacaaagttacaataaaattactaaatcaacat-aactcagagtaataaaaaaactaccttcatgtttttggacaaatcatcatgtgtttaagc |
12190059 |
T |
|
| Q |
232 |
atgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaatgtggcgtatgcgtctcttttcttcgtaaaatgtctcc |
331 |
Q |
| |
|
|||||||||||||||||| | ||| |||||| ||||||||| || || |||||||||| ||| | |||| |||||||| |||||||||||| |
|
|
| T |
12190058 |
atgttgttagttcgatggttggaagcatttgaaacaaaagaagtgaagcaatagttacaaaa---ggca---gtgtcttttttcttcataaaatgtctcc |
12189965 |
T |
|
| Q |
332 |
aagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcagcatgttcatgtccttggcct |
408 |
Q |
| |
|
|| ||||||||||| ||||| || ||||||||||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
12189964 |
aaaccattgaaggaggtctagcaggttttcttttctttagttttagcactaccttagcatgttcaggtccttggcct |
12189888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 12189884 - 12189843
Alignment:
| Q |
450 |
actagaattggaatttgaggcaaaggattcacactggcagta |
491 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
12189884 |
actagaattggaatttgagccaaaggattcacactagcagta |
12189843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University