View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11266_low_8 (Length: 508)
Name: NF11266_low_8
Description: NF11266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11266_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 38750382 - 38750786
Alignment:
| Q |
1 |
cagatgaaagaaggtattgcatattacaccttttgtgcaagcatcgagttaaacgaagtagaaaatgattggtttttgggacatgaaaagagaatagatg |
100 |
Q |
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| T |
38750382 |
cagatgaaagaaggtattgcatattacaccttttgtgcaagcatcgagttaaacgaagtagaaaatgattggtttttgggacatgaaaagagaatagatg |
38750481 |
T |
|
| Q |
101 |
aattcttctaatattcaatgaggttgattcaattttatcaattcctgtttcagtttaactccgtccacatagtgtgttggatgatttagactctacagta |
200 |
Q |
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| T |
38750482 |
aattcttctaatattcaatgaggttgattcaattttatcaattcctgattcagtttaactccgtccacatagtgtgttggatgatttagactctacagta |
38750581 |
T |
|
| Q |
201 |
tgagaacacgactagtggtccaacacaatggaagattcgaattcccatagtttggtgacgtccttttcaggatttccaatagaaagtcctcgaaaaataa |
300 |
Q |
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| T |
38750582 |
tgagaacacgactagtggtccaacacaatggaagattcgaattgccatagtttggtgacgtccttttcaggatttccaatagaaagtcctcgaaaaaaaa |
38750681 |
T |
|
| Q |
301 |
ttctgggtgcaaatcgaccttgcattttaatcttggactaatgctaagttattgattaaaaggttctctttacacctttttcttcaaaagaaatgttttt |
400 |
Q |
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| T |
38750682 |
ttctgggtgcaaatcgaccttgcattttaatcttggactaatgctaagttattgattaaaaggttctctttacacctttttcttcaaaagaaatgttttt |
38750781 |
T |
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| Q |
401 |
taatt |
405 |
Q |
| |
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||||| |
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| T |
38750782 |
taatt |
38750786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 490
Target Start/End: Original strand, 38750843 - 38750872
Alignment:
| Q |
461 |
caattaactagttattgaatcgggatatat |
490 |
Q |
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| T |
38750843 |
caattaactagttattgaatcgggatatat |
38750872 |
T |
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