View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11267_low_10 (Length: 219)
Name: NF11267_low_10
Description: NF11267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11267_low_10 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 33410339 - 33410527
Alignment:
| Q |
15 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33410339 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33410438 |
T |
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| Q |
115 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410439 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
33410527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 33424241 - 33424429
Alignment:
| Q |
15 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33424241 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33424340 |
T |
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| Q |
115 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
203 |
Q |
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| T |
33424341 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
33424429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 33416188 - 33416376
Alignment:
| Q |
15 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33416188 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33416287 |
T |
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| Q |
115 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
33416288 |
cagtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttt |
33416376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 33436393 - 33436581
Alignment:
| Q |
15 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
114 |
Q |
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|||||| |||| ||||||||||| |||||| || || || |||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||||||| |
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| T |
33436393 |
agatgatacaatagagtgagcattagaagatggaggaggggaaggagcaggtgcgccttctgctagaacagtgatgacaaatttcatttgatgagcagaa |
33436492 |
T |
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| Q |
115 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
203 |
Q |
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| T |
33436493 |
caatgatcagctacgccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttt |
33436581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 33428351 - 33428161
Alignment:
| Q |
12 |
cacagatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagca |
111 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||| ||||||||| |
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| T |
33428351 |
cacagatgaaacaacagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatgtgacgagca |
33428252 |
T |
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| Q |
112 |
gaacagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcatttt |
202 |
Q |
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||||||| |||||| | |||||||||||||||||| || |||| || ||||| |||| ||||||||||| |||||||||||||| |||| |
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| T |
33428251 |
gaacagttatcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtgcttcgtttt |
33428161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 5384 - 5196
Alignment:
| Q |
15 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
114 |
Q |
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|||||| |||| ||||||||||| |||||| || || | |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||||||| |
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| T |
5384 |
agatgatacaatagagtgagcattagaagatggaggagtggaaggagcagatgcgccttctgctagaacagtgatgacaaactttatttgatgagcagaa |
5285 |
T |
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| Q |
115 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
203 |
Q |
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|| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5284 |
caatgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttt |
5196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 24985253 - 24985105
Alignment:
| Q |
54 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaacagtgatcagcaactccacaaacataccactttcttcct |
153 |
Q |
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|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||||| || |||| || |||||| |||||||||||||||||| |
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| T |
24985253 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24985154 |
T |
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| Q |
154 |
tctgtttttagttgaatgatatcctttcctgtagaaagtgcttcatttt |
202 |
Q |
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| T |
24985153 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcatttt |
24985105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 24991083 - 24990935
Alignment:
| Q |
54 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaacagtgatcagcaactccacaaacataccactttcttcct |
153 |
Q |
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|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||||| || |||| || |||||| |||||||||||||||||| |
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| T |
24991083 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24990984 |
T |
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| Q |
154 |
tctgtttttagttgaatgatatcctttcctgtagaaagtgcttcatttt |
202 |
Q |
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|| ||||| |||||||| | |||||||| || |||||||||||||||| |
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| T |
24990983 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcatttt |
24990935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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