View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11267_low_2 (Length: 467)

Name: NF11267_low_2
Description: NF11267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11267_low_2
NF11267_low_2
[»] chr5 (14 HSPs)
chr5 (17-101)||(26894829-26894913)
chr5 (17-95)||(42561305-42561383)
chr5 (17-103)||(3028008-3028094)
chr5 (17-51)||(24308097-24308131)
chr5 (17-51)||(24365192-24365226)
chr5 (17-51)||(14913696-14913730)
chr5 (17-51)||(16153211-16153245)
chr5 (17-51)||(19571894-19571928)
chr5 (17-51)||(20142215-20142249)
chr5 (17-51)||(30182130-30182164)
chr5 (17-51)||(32147340-32147374)
chr5 (17-51)||(32617732-32617766)
chr5 (17-51)||(43060367-43060401)
chr5 (61-101)||(41384172-41384212)
[»] chr4 (11 HSPs)
chr4 (17-99)||(36391853-36391935)
chr4 (17-51)||(23777757-23777791)
chr4 (17-101)||(4415962-4416046)
chr4 (17-51)||(625923-625957)
chr4 (17-51)||(17339125-17339159)
chr4 (17-51)||(20391394-20391428)
chr4 (17-51)||(26625958-26625992)
chr4 (17-51)||(37842222-37842256)
chr4 (17-51)||(48030360-48030394)
chr4 (17-50)||(49373649-49373682)
chr4 (17-49)||(38027181-38027213)
[»] chr2 (14 HSPs)
chr2 (17-99)||(15228105-15228187)
chr2 (17-102)||(34113527-34113612)
chr2 (17-81)||(41003960-41004024)
chr2 (17-51)||(1859595-1859629)
chr2 (17-51)||(7666325-7666359)
chr2 (17-51)||(8912830-8912864)
chr2 (17-51)||(12890164-12890198)
chr2 (17-51)||(15918035-15918069)
chr2 (17-51)||(31751116-31751150)
chr2 (17-51)||(40789044-40789078)
chr2 (17-51)||(45151795-45151829)
chr2 (17-50)||(23083541-23083574)
chr2 (17-49)||(30466153-30466185)
chr2 (19-51)||(44436779-44436811)
[»] chr6 (8 HSPs)
chr6 (17-100)||(30248645-30248728)
chr6 (17-51)||(13866642-13866676)
chr6 (17-51)||(31091492-31091526)
chr6 (17-101)||(402577-402661)
chr6 (17-51)||(1147223-1147257)
chr6 (17-51)||(1730058-1730092)
chr6 (17-51)||(31150202-31150236)
chr6 (17-51)||(34741513-34741547)
[»] chr7 (9 HSPs)
chr7 (17-99)||(32814432-32814514)
chr7 (17-51)||(787980-788014)
chr7 (17-51)||(9233532-9233566)
chr7 (17-51)||(11647790-11647824)
chr7 (17-51)||(33381530-33381564)
chr7 (17-51)||(37913122-37913156)
chr7 (17-98)||(19920563-19920644)
chr7 (19-51)||(22991702-22991734)
chr7 (17-49)||(30737969-30738001)
[»] chr3 (17 HSPs)
chr3 (17-99)||(7181349-7181431)
chr3 (17-51)||(14758885-14758919)
chr3 (17-98)||(45324043-45324124)
chr3 (17-93)||(8546909-8546985)
chr3 (17-51)||(8321972-8322006)
chr3 (17-51)||(9582290-9582324)
chr3 (17-51)||(10015745-10015779)
chr3 (17-51)||(15996729-15996763)
chr3 (17-51)||(20621640-20621674)
chr3 (17-51)||(27688033-27688067)
chr3 (17-51)||(31186805-31186839)
chr3 (17-51)||(36317611-36317645)
chr3 (17-51)||(43408685-43408719)
chr3 (17-51)||(45513591-45513625)
chr3 (17-47)||(52044540-52044570)
chr3 (17-49)||(12050349-12050381)
chr3 (17-49)||(52291383-52291415)
[»] chr8 (11 HSPs)
chr8 (17-98)||(2944228-2944309)
chr8 (17-100)||(2152196-2152279)
chr8 (17-51)||(7683519-7683553)
chr8 (17-51)||(18111931-18111965)
chr8 (17-51)||(23487111-23487145)
chr8 (17-51)||(23688120-23688154)
chr8 (17-51)||(40784937-40784971)
chr8 (18-51)||(30140169-30140202)
chr8 (19-51)||(32522801-32522833)
chr8 (61-101)||(40529304-40529344)
chr8 (17-49)||(44021055-44021087)
[»] chr1 (12 HSPs)
chr1 (17-105)||(52601984-52602072)
chr1 (17-51)||(9413281-9413315)
chr1 (17-51)||(18237139-18237173)
chr1 (17-51)||(21631063-21631097)
chr1 (17-51)||(31238766-31238800)
chr1 (17-51)||(34931126-34931160)
chr1 (17-51)||(41317641-41317675)
chr1 (17-51)||(41855429-41855463)
chr1 (17-51)||(47754065-47754099)
chr1 (17-51)||(48853865-48853899)
chr1 (19-52)||(19349253-19349286)
chr1 (19-51)||(25509255-25509287)
[»] scaffold0604 (1 HSPs)
scaffold0604 (17-51)||(3739-3773)
[»] scaffold0443 (1 HSPs)
scaffold0443 (17-51)||(4727-4761)
[»] scaffold0237 (1 HSPs)
scaffold0237 (17-51)||(6566-6600)
[»] scaffold0161 (1 HSPs)
scaffold0161 (17-51)||(3484-3518)
[»] scaffold0130 (1 HSPs)
scaffold0130 (17-47)||(24270-24300)
[»] scaffold0907 (1 HSPs)
scaffold0907 (19-51)||(4533-4565)
[»] scaffold0107 (1 HSPs)
scaffold0107 (17-49)||(48704-48736)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 26894829 - 26894913
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtataa 101  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||||| | |||| ||||||||||||    
T  26894829 agttggaaatagcaaatgggtcttataaaaagggataaaaaaaattctcaaaagggtcttataattagggacggagggagtataa 26894913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 42561305 - 42561383
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagaggga 95  Q
    ||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||| |||||| ||||||    
T  42561305 agttggaaataacaaatgggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattaaggacggaggga 42561383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 3028094 - 3028008
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtataaaa 103  Q
    |||||||||||||||||| ||||||||||||||||         ||||||||||| ||||||||| | |||| |||| |||||||||    
T  3028094 agttggaaatagcaaatgagtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggaggtagtataaaa 3028008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 24308097 - 24308131
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||||||||||||||||||||    
T  24308097 agttggaaatagcaaatgggtcttataaaaaggga 24308131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 24365226 - 24365192
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||||||||||||||||||||    
T  24365226 agttggaaatagcaaatgggtcttataaaaaggga 24365192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 14913730 - 14913696
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  14913730 agttggaaatagcaaaggggtcttataaaaaggga 14913696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 16153211 - 16153245
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  16153211 agttggaaataacaaatgggtcttataaaaaggga 16153245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 19571894 - 19571928
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||| ||||||||||||||||||||||    
T  19571894 agttggaaatagtaaatgggtcttataaaaaggga 19571928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 20142215 - 20142249
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  20142215 agttggaaatagcaaaggggtcttataaaaaggga 20142249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 30182164 - 30182130
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||| ||||||||||||||||||||||    
T  30182164 agttggaaatagaaaatgggtcttataaaaaggga 30182130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 32147374 - 32147340
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  32147374 agttggaaataacaaatgggtcttataaaaaggga 32147340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 32617732 - 32617766
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||| ||||||||||||||||||||||    
T  32617732 agttggaaatagaaaatgggtcttataaaaaggga 32617766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 43060367 - 43060401
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  43060367 agttggaaatagcaaaagggtcttataaaaaggga 43060401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 41384172 - 41384212
Alignment:
Q  61 ttctcaaaaggatcttataatcaaggacagagggagtataa 101  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  41384172 ttctcaaaaggatcttataattagggacggagggagtataa 41384212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 36391935 - 36391853
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtat 99  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||| ||||||||| |||||| ||||||||||    
T  36391935 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaaggacggagggagtat 36391853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 23777757 - 23777791
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||||||||||||||||||||    
T  23777757 agttggaaatagcaaatgggtcttataaaaaggga 23777791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 4416046 - 4415962
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtataa 101  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||| ||||||||| | |||| |||| |||||||    
T  4416046 agttggaaatagcaaaggggtcttataaaaagggacaaaaaacattctcaaaagggtcttataattagggacggaggtagtataa 4415962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 625923 - 625957
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  625923 agttggaaatagcaaaggggtcttataaaaaggga 625957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 17339159 - 17339125
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  17339159 agttggaaatagcaaaggggtcttataaaaaggga 17339125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 20391394 - 20391428
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  20391394 agttggaaataacaaatgggtcttataaaaaggga 20391428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 26625958 - 26625992
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  26625958 agttggaaatagcaaaggggtcttataaaaaggga 26625992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 37842256 - 37842222
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  37842256 agttggaaatagcaaaggggtcttataaaaaggga 37842222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 48030394 - 48030360
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  48030394 agttggaaatagcaaaggggtcttataaaaaggga 48030360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 49373649 - 49373682
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggg 50  Q
    |||||||||||||||| |||||||||||||||||    
T  49373649 agttggaaatagcaaaggggtcttataaaaaggg 49373682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 38027213 - 38027181
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  38027213 agttggaaatagcaaaggggtcttataaaaagg 38027181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 15228105 - 15228187
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtat 99  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||| | |||| ||||||||||    
T  15228105 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtat 15228187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 34113612 - 34113527
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtataaa 102  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||| ||||||||| | |||| || ||||||||||    
T  34113612 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggatggagtataaa 34113527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 41004024 - 41003960
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataat 81  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||    
T  41004024 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataat 41003960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 1859629 - 1859595
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  1859629 agttggaaatagcaaatgagtcttataaaaaggga 1859595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 7666359 - 7666325
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  7666359 agttggaaatagcaaatgcgtcttataaaaaggga 7666325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 8912830 - 8912864
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  8912830 agttggaaatagcaaaggggtcttataaaaaggga 8912864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 12890164 - 12890198
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  12890164 agttggaaatagcaaaggggtcttataaaaaggga 12890198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 15918035 - 15918069
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  15918035 agttggaaatagcaaatgagtcttataaaaaggga 15918069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 31751150 - 31751116
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  31751150 agttggaaatagcaaaggggtcttataaaaaggga 31751116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 40789044 - 40789078
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  40789044 agttggaaatagcaaaggggtcttataaaaaggga 40789078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 45151829 - 45151795
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  45151829 agttggaaatagcaaatgagtcttataaaaaggga 45151795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 23083574 - 23083541
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggg 50  Q
    |||| |||||||||||||||||||||||||||||    
T  23083574 agttcgaaatagcaaatgggtcttataaaaaggg 23083541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 30466185 - 30466153
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  30466185 agttggaaatagcaaaggggtcttataaaaagg 30466153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 44436779 - 44436811
Alignment:
Q  19 ttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||    
T  44436779 ttggaaatagcaaatgagtcttataaaaaggga 44436811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 30248728 - 30248645
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtata 100  Q
    ||||||||||| |||||||||||||||||||||||         ||||||||||| ||||||||| | |||| |||||||||||    
T  30248728 agttggaaataacaaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtata 30248645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 13866676 - 13866642
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||||||||||||||||||||    
T  13866676 agttggaaatagcaaatgggtcttataaaaaggga 13866642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 31091526 - 31091492
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||||||||||||||||||||    
T  31091526 agttggaaatagcaaatgggtcttataaaaaggga 31091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 402577 - 402661
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtataa 101  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||| ||||||||| | |||| |||| |||||||    
T  402577 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtataa 402661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 1147223 - 1147257
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  1147223 agttggaaatagcaaaagggtcttataaaaaggga 1147257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 1730058 - 1730092
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  1730058 agttggaaatagcaaaagggtcttataaaaaggga 1730092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 31150202 - 31150236
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  31150202 agttggaaatagcaaaggggtcttataaaaaggga 31150236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 34741547 - 34741513
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  34741547 agttggaaataacaaatgggtcttataaaaaggga 34741513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 32814514 - 32814432
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtat 99  Q
    ||||||||||| |||||||||||||||||||||||         ||||||||||| ||||||||| | |||| ||||||||||    
T  32814514 agttggaaataacaaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 32814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 788014 - 787980
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  788014 agttggaaatagcaaatgagtcttataaaaaggga 787980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 9233532 - 9233566
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  9233532 agttggaaatagcaaatgagtcttataaaaaggga 9233566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 11647790 - 11647824
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  11647790 agttggaaatagcaaaggggtcttataaaaaggga 11647824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 33381530 - 33381564
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  33381530 agttggaaatagcaaaggggtcttataaaaaggga 33381564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 37913156 - 37913122
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||| ||||||||||||||||||||||    
T  37913156 agttggaaatagaaaatgggtcttataaaaaggga 37913122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 19920644 - 19920563
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagta 98  Q
    |||||||||||||||| |||||||||||||||| |         ||||||||||| ||||||||| | |||| |||||||||    
T  19920644 agttggaaatagcaaaggggtcttataaaaaggaacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 22991702 - 22991734
Alignment:
Q  19 ttggaaatagcaaatgggtcttataaaaaggga 51  Q
    ||||||||||||||||| |||||||||||||||    
T  22991702 ttggaaatagcaaatggatcttataaaaaggga 22991734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 30737969 - 30738001
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagg 49  Q
    |||||||||||| ||||||||||||||||||||    
T  30737969 agttggaaatagaaaatgggtcttataaaaagg 30738001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 7181431 - 7181349
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtat 99  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||| ||||||||| | |||| ||||||||||    
T  7181431 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtat 7181349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 14758919 - 14758885
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||||||||||||||||||||    
T  14758919 agttggaaatagcaaatgggtcttataaaaaggga 14758885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 45324043 - 45324124
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagta 98  Q
    |||||||||||||||| |||||||||||||||||||        ||||||||| | ||||||||| |||||| |||| ||||    
T  45324043 agttggaaatagcaaaggggtcttataaaaagggataaaaaaaattctcaaaatggtcttataattaaggacggaggtagta 45324124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 8546985 - 8546909
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagg 93  Q
    ||||||||||| |||||||||||||||||||||||         ||||||||||| ||||||||| |||||| ||||    
T  8546985 agttggaaataacaaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaaggacggagg 8546909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 8322006 - 8321972
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  8322006 agttggaaatagcaaaggggtcttataaaaaggga 8321972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 9582324 - 9582290
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  9582324 agttggaaatagcaaaagggtcttataaaaaggga 9582290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 10015745 - 10015779
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  10015745 agttggaaatagcaaaggggtcttataaaaaggga 10015779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 15996729 - 15996763
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  15996729 agttggaaatagcaaaggggtcttataaaaaggga 15996763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 20621640 - 20621674
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  20621640 agttggaaatagcaaaggggtcttataaaaaggga 20621674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 27688067 - 27688033
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  27688067 agttggaaatagcaaatgagtcttataaaaaggga 27688033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 31186839 - 31186805
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  31186839 agttggaaatagcaaaggggtcttataaaaaggga 31186805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 36317611 - 36317645
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  36317611 agttggaaatagcaaatgagtcttataaaaaggga 36317645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 43408685 - 43408719
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  43408685 agttggaaataacaaatgggtcttataaaaaggga 43408719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 45513591 - 45513625
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  45513591 agttggaaatagcaaaggggtcttataaaaaggga 45513625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 52044570 - 52044540
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaa 47  Q
    |||||||||||||||||||||||||||||||    
T  52044570 agttggaaatagcaaatgggtcttataaaaa 52044540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 12050349 - 12050381
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagg 49  Q
    ||||||||||| |||||||||||||||||||||    
T  12050349 agttggaaataacaaatgggtcttataaaaagg 12050381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 52291383 - 52291415
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagg 49  Q
    |||||||||||||||||| ||||||||||||||    
T  52291383 agttggaaatagcaaatgagtcttataaaaagg 52291415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 2944228 - 2944309
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagta 98  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||| ||||||||| | |||| |||||||||    
T  2944228 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 2152196 - 2152279
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtata 100  Q
    ||||||||||||||||| |||||||||||||||||         ||||||||||| ||||||||| | |||| |||| ||||||    
T  2152196 agttggaaatagcaaataggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtata 2152279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 7683519 - 7683553
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  7683519 agttggaaatagcaaatgagtcttataaaaaggga 7683553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 18111931 - 18111965
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  18111931 agttggaaatagcaaaggggtcttataaaaaggga 18111965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 23487145 - 23487111
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  23487145 agttggaaatagcaaaggggtcttataaaaaggga 23487111  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 23688120 - 23688154
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  23688120 agttggaaatagcaaaggggtcttataaaaaggga 23688154  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 40784971 - 40784937
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  40784971 agttggaaatagcaaatgagtcttataaaaaggga 40784937  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 30140202 - 30140169
Alignment:
Q  18 gttggaaatagcaaatgggtcttataaaaaggga 51  Q
    ||||||||||||||||| ||||||||||||||||    
T  30140202 gttggaaatagcaaatgtgtcttataaaaaggga 30140169  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 32522801 - 32522833
Alignment:
Q  19 ttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||| ||||||||||||||||||    
T  32522801 ttggaaatagcaaaggggtcttataaaaaggga 32522833  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 40529344 - 40529304
Alignment:
Q  61 ttctcaaaaggatcttataatcaaggacagagggagtataa 101  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  40529344 ttctcaaaaggatcttataattagggacggagggagtataa 40529304  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 44021087 - 44021055
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagg 49  Q
    |||||||||||| ||||||||||||||||||||    
T  44021087 agttggaaatagaaaatgggtcttataaaaagg 44021055  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 52602072 - 52601984
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagggatnnnnnnnnttctcaaaaggatcttataatcaaggacagagggagtataaaaat 105  Q
    |||||||||||||||| ||||||||||||||||||         |||| |||||| ||||||||| | |||| ||||||||||| ||||    
T  52602072 agttggaaatagcaaaggggtcttataaaaagggacaaaaaaaattcttaaaagggtcttataattagggacggagggagtatacaaat 52601984  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 9413281 - 9413315
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  9413281 agttggaaatagcaaaggggtcttataaaaaggga 9413315  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 18237173 - 18237139
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  18237173 agttggaaatagcaaatgagtcttataaaaaggga 18237139  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 21631063 - 21631097
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  21631063 agttggaaatagcaaaggggtcttataaaaaggga 21631097  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 31238800 - 31238766
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  31238800 agttggaaatagcaaaggggtcttataaaaaggga 31238766  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 34931160 - 34931126
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  34931160 agttggaaatagcaaaggggtcttataaaaaggga 34931126  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 41317675 - 41317641
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  41317675 agttggaaatagcaaaggggtcttataaaaaggga 41317641  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 41855429 - 41855463
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  41855429 agttggaaatagcaaaggggtcttataaaaaggga 41855463  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 47754099 - 47754065
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  47754099 agttggaaatagcaaatgagtcttataaaaaggga 47754065  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 48853899 - 48853865
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||||| ||||||||||||||||    
T  48853899 agttggaaatagcaaatgagtcttataaaaaggga 48853865  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 19349286 - 19349253
Alignment:
Q  19 ttggaaatagcaaatgggtcttataaaaagggat 52  Q
    ||||||||| ||||||||||||||||||||||||    
T  19349286 ttggaaataccaaatgggtcttataaaaagggat 19349253  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 25509287 - 25509255
Alignment:
Q  19 ttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||| ||||||||||||||||||    
T  25509287 ttggaaatagcaaaggggtcttataaaaaggga 25509255  T

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Target: scaffold0604 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 3739 - 3773
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  3739 agttggaaatagcaaaggggtcttataaaaaggga 3773  T

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Target: scaffold0443 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 4761 - 4727
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  4761 agttggaaatagcaaaggggtcttataaaaaggga 4727  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 6566 - 6600
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  6566 agttggaaatagcaaaggggtcttataaaaaggga 6600  T

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Target: scaffold0161 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 3518 - 3484
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  3518 agttggaaatagcaaaggggtcttataaaaaggga 3484  T

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Target: scaffold0130 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 24300 - 24270
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaa 47  Q
    |||||||||||||||||||||||||||||||    
T  24300 agttggaaatagcaaatgggtcttataaaaa 24270  T

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Target: scaffold0907 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0907
Description:

Target: scaffold0907; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4533 - 4565
Alignment:
Q  19 ttggaaatagcaaatgggtcttataaaaaggga 51  Q
    |||||||||||||| ||||||||||||||||||    
T  4533 ttggaaatagcaaaggggtcttataaaaaggga 4565  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 48736 - 48704
Alignment:
Q  17 agttggaaatagcaaatgggtcttataaaaagg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  48736 agttggaaatagcaaaggggtcttataaaaagg 48704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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