View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11267_low_3 (Length: 379)
Name: NF11267_low_3
Description: NF11267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11267_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 11655388 - 11655226
Alignment:
| Q |
52 |
gtataaccatccaaacataaaattaatttttagctcttctttttcacgccatattgtcatattagcattgtttagactacatagtggcagccagacactt |
151 |
Q |
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| T |
11655388 |
gtataaccaaacaaaaataaagttaatttttagctcttctttttcacgccattttgacatattagcattgtttagactacatagtggcagccagacactt |
11655289 |
T |
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| Q |
152 |
agcttattgttaactgcaaaattaaatacaataagactaacatgagtatttctgcacagtaat |
214 |
Q |
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| T |
11655288 |
agcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaat |
11655226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 16033462 - 16033300
Alignment:
| Q |
52 |
gtataaccatccaaacataaaattaatttttagctcttctttttcacgccatattgtcatattagcattgtttagactacatagtggcagccagacactt |
151 |
Q |
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| T |
16033462 |
gtataaccaaacaaaaataaagttaatttttagctcttctttttcacgccattttgacatattagcattgtttagactacatagtggcagccagacactt |
16033363 |
T |
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| Q |
152 |
agcttattgttaactgcaaaattaaatacaataagactaacatgagtatttctgcacagtaat |
214 |
Q |
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| T |
16033362 |
agcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaat |
16033300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 52 - 214
Target Start/End: Original strand, 7393897 - 7394059
Alignment:
| Q |
52 |
gtataaccatccaaacataaaattaatttttagctcttctttttcacgccatattgtcatattagcattgtttagactacatagtggcagccagacactt |
151 |
Q |
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||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7393897 |
gtataaccaaacaaaaataaagttaatttttagctcttctttttcacgccattttgacatattagcattgtttagactacatagtggcagccagacactt |
7393996 |
T |
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| Q |
152 |
agcttattgttaactgcaaaattaaatacaataagactaacatgagtatttctgcacagtaat |
214 |
Q |
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| T |
7393997 |
agcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaat |
7394059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 19583211 - 19583049
Alignment:
| Q |
52 |
gtataaccatccaaacataaaattaatttttagctcttctttttcacgccatattgtcatattagcattgtttagactacatagtggcagccagacactt |
151 |
Q |
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||||||||| |||| ||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19583211 |
gtataaccaaacaaaaataaagttaatttttagctcttctttttcgcgccattttgacatattagcattgtttagactacatagtggcagccagacactt |
19583112 |
T |
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| Q |
152 |
agcttattgttaactgcaaaattaaatacaataagactaacatgagtatttctgcacagtaat |
214 |
Q |
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| T |
19583111 |
agcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaat |
19583049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 31211022 - 31210967
Alignment:
| Q |
27 |
agagcaatatttcttcgacaatggagtataaccatccaaacataaaa-ttaatttt |
81 |
Q |
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| T |
31211022 |
agagcaatatttcttctacaatggagtataaccatctaaacataaaagttaatttt |
31210967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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