View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11267_low_4 (Length: 306)
Name: NF11267_low_4
Description: NF11267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11267_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 21181891 - 21181605
Alignment:
| Q |
5 |
gaggagcacagagtgttgatcttagccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgacc |
104 |
Q |
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| T |
21181891 |
gaggaccatagagtgttgatcttaaccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgacc |
21181792 |
T |
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| Q |
105 |
tgtttggatggggcattgagtcacatatgccggtccatcagcccatcccgattgaagttgtcgaatgccgtgcctattaaaaagatagccaagtttttca |
204 |
Q |
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| T |
21181791 |
tgtttggatggggcattgagtcacatatgccggtccatcagcccatcctgattgaagttgtcgaatgccgtgcctattaaaaagatagccaagtttttca |
21181692 |
T |
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| Q |
205 |
catattacttttatgctaagataaacaaattcgatacaattattcttcttaggaaaagattgttctttaccagtgaatcgagatgtt |
291 |
Q |
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| T |
21181691 |
catattacttttatgctaagataaacaaattcgatacaattattcttcttaggaaaagattgttctttaccagtgaatcgagatgtt |
21181605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 21204646 - 21204478
Alignment:
| Q |
14 |
agagtgttgatcttagccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgacctgtttggat |
113 |
Q |
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| T |
21204646 |
agagtgttgatcttaaccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgatctgtttggat |
21204547 |
T |
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| Q |
114 |
ggggcattgagtcacatatgccggtccatcagcccatcccgattgaagttgtcgaatgccgtgcctatt |
182 |
Q |
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| T |
21204546 |
ggggcattgagtcacatatgctggcccatcagcccatcctgattgaagttgtctaatgccatgcctatt |
21204478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 21852194 - 21852028
Alignment:
| Q |
16 |
agtgttgatcttagccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgacctgtttggatgg |
115 |
Q |
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| T |
21852194 |
agtgttgaccttaaccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgacctgtttggatgg |
21852095 |
T |
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| Q |
116 |
ggcattgagtcacatatgccggtccatcagcccatcccgattgaagttgtcgaatgccgtgcctatt |
182 |
Q |
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| T |
21852094 |
ggcattgtgtcacatatgctggtccatcagcccatcctgactgaagttgtctaatgccatgcctatt |
21852028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 21208943 - 21208772
Alignment:
| Q |
14 |
agagtgttgatcttagccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgacctgtttggat |
113 |
Q |
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| T |
21208943 |
agagtgttgaccttaaccaaggtatatgagcatgccaaaagagtgttcctctttggcctttaatggtgtaattgtaaacatagctttgacctgtttggat |
21208844 |
T |
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| Q |
114 |
ggggcattgagtcac---atatgccggtccatcagcccatcccgattgaagttgtcgaatgccgtgcctatt |
182 |
Q |
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| T |
21208843 |
agggcactgagtcacatgatatgctggtccatcagcccatcctgattgaagttgtctaatgccatgcctatt |
21208772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 22601963 - 22601914
Alignment:
| Q |
19 |
gttgatcttagccaagatatatgagcatgccaaaagagtgttcctctttg |
68 |
Q |
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| T |
22601963 |
gttgctcttagccatgatatgtgagcatgccaaaatagggttcctctttg |
22601914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 35070341 - 35070221
Alignment:
| Q |
25 |
cttagccaagatatatgagcatgccaaaagagtgttcctctttggcctttaattgtgtaattgtaaacatagctttgacctgtttggatggggcattgag |
124 |
Q |
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| T |
35070341 |
cttagccaagtgatatgtgcatgccatagaagtgtgcctctttgacctgtaatggtaaagttgtaaacaaagctttgtcctgtctgaatagggcattgtg |
35070242 |
T |
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| Q |
125 |
tcacatatgccggtccatcag |
145 |
Q |
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| T |
35070241 |
tgacatatgccggcccatcag |
35070221 |
T |
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