View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11267_low_7 (Length: 280)
Name: NF11267_low_7
Description: NF11267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11267_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 30723259 - 30723113
Alignment:
| Q |
4 |
agttataagtgattcaggtagtttgttgattatatcctcttttgccttatgcttcttgtgagttgaaccaacagactccatttgtataacagttttccta |
103 |
Q |
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| T |
30723259 |
agttataagtgaatcaggtagattgctgattatatcctcgtttgccttatgcttcttattacttgaaccaacagactccatttgtttaacagttttccta |
30723160 |
T |
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| Q |
104 |
gaactatttttctgcattttcaaacacgaacaattatcaatattaat |
150 |
Q |
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| T |
30723159 |
gaactatttttctgcattttcaaacactaccaagtatcaatattaat |
30723113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 30715110 - 30715072
Alignment:
| Q |
75 |
cagactccatttgtataacagttttcctagaactatttt |
113 |
Q |
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| T |
30715110 |
cagactccatttgtatagcagttttcctagaactatttt |
30715072 |
T |
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