View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11267_low_8 (Length: 274)

Name: NF11267_low_8
Description: NF11267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11267_low_8
NF11267_low_8
[»] chr4 (3 HSPs)
chr4 (1-260)||(24860307-24860566)
chr4 (1-246)||(34748516-34748761)
chr4 (184-235)||(44771102-44771153)
[»] chr7 (3 HSPs)
chr7 (2-260)||(21317336-21317594)
chr7 (2-260)||(3930069-3930327)
chr7 (119-260)||(3928717-3928858)
[»] chr5 (4 HSPs)
chr5 (1-260)||(12531253-12531512)
chr5 (1-260)||(12547107-12547366)
chr5 (2-171)||(9866853-9867024)
chr5 (91-171)||(9869866-9869946)
[»] chr8 (6 HSPs)
chr8 (1-246)||(26591929-26592174)
chr8 (2-260)||(43479782-43480040)
chr8 (1-234)||(25865461-25865694)
chr8 (1-258)||(38799256-38799513)
chr8 (1-258)||(38822004-38822261)
chr8 (1-246)||(41943705-41943950)
[»] scaffold0197 (1 HSPs)
scaffold0197 (2-260)||(30774-31031)
[»] chr2 (4 HSPs)
chr2 (2-260)||(13576110-13576368)
chr2 (173-246)||(34571568-34571641)
chr2 (1-232)||(34579050-34579281)
chr2 (1-232)||(34584799-34585030)
[»] chr1 (2 HSPs)
chr1 (140-225)||(7594402-7594487)
chr1 (173-225)||(18492741-18492793)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 24860307 - 24860566
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860307 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 24860406  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860407 cctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 24860506  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24860507 ttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctg 24860566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 34748516 - 34748761
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |||||||| ||||||||||||    
T  34748516 gcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccaccggtggagtgaagaaa 34748615  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    |||||||||||| | || ||||||||||| || || || ||||| |||||||| || ||||| || || |||||||| ||||| || ||||| ||||| |    
T  34748616 cctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctgg 34748715  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagag 246  Q
    ||||||| |||||||| |||||||| || |||||||||||||||||    
T  34748716 ttcgtgagatcgctcaggatttcaagactgatctccgtttccagag 34748761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 44771153 - 44771102
Alignment:
Q  184 tccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctc 235  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  44771153 tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctc 44771102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 21317336 - 21317594
Alignment:
Q  2 caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac 101  Q
    |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||||| ||||||||||| |    
T  21317336 caaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagc 21317435  T
Q  102 ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt 201  Q
    | ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| ||  |||||||||||||||||||||| ||    
T  21317436 cacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgt 21317535  T
Q  202 tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    ||||||||||||||| ||||||||||| |||||| | |||||||| || ||||||||||    
T  21317536 tcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctg 21317594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 3930327 - 3930069
Alignment:
Q  2 caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac 101  Q
    |||||||| || |||||||||||||||||||| ||| |||| || || || || ||||||||  | ||||| || || || ||||| || || |||||||    
T  3930327 caaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccggtggtgtaaagaaac 3930228  T
Q  102 ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt 201  Q
    | ||| | |||||||| ||||| ||||||||||| || ||||||||||| || || ||||| || ||||||||  | ||||||||||||||| |  | ||    
T  3930227 cacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggt 3930128  T
Q  202 tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    ||||||||||||||| ||||||||||| ||||| || || |||||||| ||||||||||    
T  3930127 tcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctg 3930069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 260
Target Start/End: Complemental strand, 3928858 - 3928717
Alignment:
Q  119 ggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaag 218  Q
    ||||| |||||| | || |||||| | ||||| ||||| | ||| |||||||||||  | |||||||| ||| || |  | |||| |||||||||||| |    
T  3928858 ggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcagg 3928759  T
Q  219 atttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    |||||||||| |||||||| |||||||  |||||||||||||    
T  3928758 atttcaaaactgatctccgattccagatcagcgctgtttctg 3928717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 12531253 - 12531512
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| |||||     
T  12531253 gcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaag 12531352  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    || ||| | |||||||| ||||| || |||||||| || |||||||||||||| || ||||| |||||||| ||  | || |||||||||||  | || |    
T  12531353 ccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttg 12531452  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||    
T  12531453 ttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctg 12531512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 12547366 - 12547107
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| |||||     
T  12547366 gcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaag 12547267  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    || ||| | |||||||| ||||| || |||||||| || |||||||||||||| || ||||| |||||||| ||  | || |||||||||||  | || |    
T  12547266 ccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttg 12547167  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||    
T  12547166 ttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctg 12547107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 9867024 - 9866853
Alignment:
Q  2 caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac 101  Q
    ||||| ||||||||||||||||| || ||||||||| | ||| |||| || |||||||| || |||||||| ||||| || || || ||||||||||| |    
T  9867024 caaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagtgaagaagc 9866925  T
Q  102 ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgca--agtaccaaaaaagcacagagcttct 171  Q
    | |||||||||||||| |||||||| || ||||| || ||||| |  |||||||||| ||||  ||||||||    
T  9866924 cacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct 9866853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 9869866 - 9869946
Alignment:
Q  91 agtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttct 171  Q
    |||||||||||| ||| ||||| |||  |||||||| || ||||| || ||||| |||||||| || ||||| ||||||||    
T  9869866 agtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttct 9869946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26591929 - 26592174
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||| || ||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||     
T  26591929 gcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgaccggcggagtgaagaag 26592028  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    || ||||||||| | || |||||||||||||| || || |||||||||||||| || ||||| || |||||||| || |||||||| ||||| ||||| |    
T  26592029 ccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttg 26592128  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagag 246  Q
    ||||||| || ||||| |||||||| || ||||||||||| |||||    
T  26592129 ttcgtgagattgctcaggatttcaagacggatctccgttttcagag 26592174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 43480040 - 43479782
Alignment:
Q  2 caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac 101  Q
    ||||| ||||||||||||||||| || ||||| |||||||| || || || || |||||||| |||||||| ||||| |||||||| ||||||||||| |    
T  43480040 caaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccaccggaggagtgaagaagc 43479941  T
Q  102 ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt 201  Q
    | ||| | |||||||| ||||| || || ||||| || ||||||||||| || || || || |||||||||||| | || |||||||||||| |  | ||    
T  43479940 cacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggt 43479841  T
Q  202 tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    | | ||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||    
T  43479840 tagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctg 43479782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25865461 - 25865694
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||| ||||||||||||||||| || || |||||||||||||| || || || ||||| ||  ||||||| |||||| |||||||||||||||||||     
T  25865461 gcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccaccggcggagtgaagaag 25865560  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    ||||| ||||  ||||| |||||||| || ||||| || ||||| ||||| || || || || |||||| | ||||| || ||||||||||| ||||| |    
T  25865561 cctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttg 25865660  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatct 234  Q
    |||||||||| ||||| ||||||||||| |||||    
T  25865661 ttcgtgaaattgctcaggatttcaaaacggatct 25865694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 38799256 - 38799513
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||||||||||||||||||||| || || || ||  |||||||||| || || || ||||| |||||||| ||||| || ||||| |||||||||||     
T  38799256 gcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaag 38799355  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    || ||  | ||| | || ||||| || ||  |  | || ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| |    
T  38799356 ccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttg 38799455  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttc 258  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||| ||||| |||||    
T  38799456 ttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttc 38799513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 38822261 - 38822004
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||||||||||||||||||||| || || || ||  |||||||||| || || || ||||| |||||||| ||||| || ||||| |||||||||||     
T  38822261 gcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaag 38822162  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    || ||  | ||| | || ||||| || ||  |  | || ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| |    
T  38822161 ccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttg 38822062  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttc 258  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||| ||||| |||||    
T  38822061 ttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttc 38822004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 41943705 - 41943950
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||| ||||||||||||||||| || || || ||||||||||| || || || || || || || ||||| |||||  | ||||| ||||| ||||||    
T  41943705 gcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaaccggtggagtcaagaaa 41943804  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    ||||| || |  ||||| || ||||| |||||||| || ||||| || ||||| || || || || ||| | ||||| || ||||||||||||||||| |    
T  41943805 cctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttg 41943904  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagag 246  Q
    |||||||||| |||||||||||||| || |||||| | ||||||||    
T  41943905 ttcgtgaaattgctcaagatttcaagacggatctcagattccagag 41943950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 30774 - 31031
Alignment:
Q  2 caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac 101  Q
    |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||||| ||||||||||| |    
T  30774 caaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagc 30873  T
Q  102 ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt 201  Q
    | ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| ||  |||||||| ||||||||||||| ||    
T  30874 cacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaactt-cattccaacgtcttgt 30972  T
Q  202 tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    ||||||||||||||| |||||||||||  ||||| | |||||||| || ||||||||||    
T  30973 tcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctg 31031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 13576110 - 13576368
Alignment:
Q  2 caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac 101  Q
    |||||||| |||||||||||||| |||||||||||| | || || || || ||||||||||| |||||||||||||| |||||||| ||||||||||| |    
T  13576110 caaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccaccggaggagtgaagaagc 13576209  T
Q  102 ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt 201  Q
    | || ||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||| |||||||||||  | || |||||||||||| |  | ||    
T  13576210 cacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggt 13576309  T
Q  202 tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttctg 260  Q
    ||| ||||| ||||| ||||||||||| ||||||||||| || || || ||||||||||    
T  13576310 tcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctg 13576368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 34571641 - 34571568
Alignment:
Q  173 atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagag 246  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||| || ||| | || ||||||||    
T  34571641 atccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagag 34571568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34579281 - 34579050
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||| ||||||| |||||||   || || |||||||||||||| || || ||||| || || || ||||| |  ||| | ||||||||| | |||||     
T  34579281 gcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaag 34579182  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    ||||| ||||  ||||| ||||| || || ||||| || || || ||||| || ||  | || || ||| | || || |||||||||||||| ||||| |    
T  34579181 cctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttg 34579082  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagat 232  Q
    |||||||||| |||||  ||||||| ||||||    
T  34579081 ttcgtgaaattgctcagaatttcaagacagat 34579050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34585030 - 34584799
Alignment:
Q  1 gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa 100  Q
    |||||| ||||||| |||||||   || || |||||||||||||| || || ||||| || || || ||||| |  ||| | ||||||||| | |||||     
T  34585030 gcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaag 34584931  T
Q  101 cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg 200  Q
    ||||| ||||  ||||| ||||| || || ||||| || || || ||||| || ||  | || || ||| | || || |||||||||||||| ||||| |    
T  34584930 cctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttg 34584831  T
Q  201 ttcgtgaaatcgctcaagatttcaaaacagat 232  Q
    |||||||||| |||||  ||||||| ||||||    
T  34584830 ttcgtgaaattgctcagaatttcaagacagat 34584799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 7594487 - 7594402
Alignment:
Q  140 atccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 225  Q
    ||||| |||||||| || || || |||||| | ||||| || |||||||| || ||||| || |||||||| ||||||||||||||    
T  7594487 atccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa 7594402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 18492741 - 18492793
Alignment:
Q  173 atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 225  Q
    ||||| ||||||||||||||  |||| |||||||||||  |||||||||||||    
T  18492741 atccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaa 18492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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