View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11267_low_9 (Length: 247)
Name: NF11267_low_9
Description: NF11267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11267_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 36332437 - 36332278
Alignment:
| Q |
79 |
atattccctattgagaatccacacctttaacagtaggaccttgaggcctataattatacctctttgaaattaccaaatagacaaagaaattgatcaagct |
178 |
Q |
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| T |
36332437 |
atattccctattgagaatccacacctttaacagtaggaccttgaggcctatacttatacctctttgaaattaccaaataaacaaagaaattgatcaagct |
36332338 |
T |
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| Q |
179 |
gatcaaagaaagcaacaagtagaataggttcaaatggtttctgttaatattgttctctgc |
238 |
Q |
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| T |
36332337 |
gatcaaagaaagcaacaagtagaaaaggttcaaatggtttctgttaatattgttccctgc |
36332278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 36325176 - 36325017
Alignment:
| Q |
79 |
atattccctattgagaatccacacctttaacagtaggaccttgaggcctataattatacctctttgaaattaccaaatagacaaagaaattgatcaagct |
178 |
Q |
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|||||| ||||||||||||||||||||||| | | |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36325176 |
atattctctattgagaatccacacctttaattgcatgaccttgaggcctatacttgtacctctttgaaactaccaaatagacaaagaaattgatcaagct |
36325077 |
T |
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| Q |
179 |
gatcaaagaaagcaacaagtagaataggttcaaatggtttctgttaatattgttctctgc |
238 |
Q |
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| T |
36325076 |
cagtaaagaaagcaacaagtagaacagattcaaatggtttctgttaatattgttccctgc |
36325017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 36332551 - 36332493
Alignment:
| Q |
19 |
taacagacgtgcaaggaaaacaaacgtgcaaacctctatttcttcacttacgtttgaca |
77 |
Q |
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| T |
36332551 |
taacagacgtgcaaggaaaacaaacgtgcaaacctctatttcttcacttacgtttgaca |
36332493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 5460398 - 5460285
Alignment:
| Q |
116 |
accttgaggcctataattatacctctttgaaattaccaaatagacaaagaaattgatcaagctgatcaaagaaagcaacaagtagaataggttcaaatgg |
215 |
Q |
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||||||||| || || || || |||||||||| | ||||||||||||||| ||||||||||| | | ||||| ||||||||||| ||||| | ||| |
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| T |
5460398 |
accttgaggtctgtatttgtatctctttgaaacaaacaaatagacaaagaagttgatcaagctcacaatggaaaggaacaagtagaacaggtttagatga |
5460299 |
T |
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| Q |
216 |
tttctgttaatatt |
229 |
Q |
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| T |
5460298 |
tttctattgatatt |
5460285 |
T |
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