View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11268_high_10 (Length: 513)

Name: NF11268_high_10
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11268_high_10
NF11268_high_10
[»] chr3 (24 HSPs)
chr3 (9-495)||(45236329-45236817)
chr3 (3-76)||(25191273-25191346)
chr3 (1-69)||(52138701-52138769)
chr3 (1-76)||(33272341-33272416)
chr3 (2-76)||(2341028-2341102)
chr3 (3-76)||(38849988-38850061)
chr3 (1-76)||(51448022-51448097)
chr3 (9-75)||(345032-345098)
chr3 (15-75)||(26490212-26490272)
chr3 (9-73)||(50249278-50249342)
chr3 (1-48)||(21995-22042)
chr3 (10-65)||(42510333-42510388)
chr3 (17-75)||(653866-653924)
chr3 (1-75)||(43308461-43308535)
chr3 (7-53)||(47542031-47542077)
chr3 (1-75)||(53519481-53519555)
chr3 (17-75)||(54128273-54128331)
chr3 (15-76)||(28245331-28245392)
chr3 (91-136)||(37788794-37788839)
chr3 (5-74)||(43695082-43695151)
chr3 (90-145)||(2128341-2128397)
chr3 (15-75)||(45728041-45728101)
chr3 (1-41)||(46431984-46432024)
chr3 (3-47)||(47233911-47233955)
[»] chr2 (21 HSPs)
chr2 (9-431)||(7824867-7825319)
chr2 (1-76)||(36183345-36183420)
chr2 (1-75)||(38429779-38429853)
chr2 (9-69)||(45077649-45077709)
chr2 (1-76)||(3865966-3866041)
chr2 (1-76)||(4807486-4807561)
chr2 (1-76)||(8180674-8180749)
chr2 (8-75)||(23714578-23714645)
chr2 (8-75)||(24102250-24102317)
chr2 (1-75)||(41197541-41197615)
chr2 (1-75)||(41763354-41763428)
chr2 (3-76)||(11992421-11992494)
chr2 (15-76)||(19337176-19337237)
chr2 (1-76)||(451935-452010)
chr2 (1-76)||(3243964-3244039)
chr2 (8-76)||(2610422-2610490)
chr2 (10-53)||(9647927-9647970)
chr2 (2-40)||(9579015-9579053)
chr2 (9-42)||(9556689-9556722)
chr2 (10-71)||(36039122-36039183)
chr2 (1-42)||(38453002-38453043)
[»] chr8 (15 HSPs)
chr8 (1-76)||(39946751-39946826)
chr8 (3-75)||(39953579-39953651)
chr8 (1-69)||(40813223-40813291)
chr8 (1-76)||(36545041-36545116)
chr8 (1-76)||(12492155-12492230)
chr8 (1-75)||(30748354-30748428)
chr8 (10-75)||(45512818-45512883)
chr8 (1-53)||(36395263-36395315)
chr8 (1-69)||(36565554-36565622)
chr8 (1-53)||(39760737-39760789)
chr8 (1-76)||(2796449-2796526)
chr8 (15-53)||(30456538-30456576)
chr8 (10-47)||(29520583-29520620)
chr8 (10-42)||(16252863-16252895)
chr8 (11-47)||(42493627-42493663)
[»] chr4 (33 HSPs)
chr4 (1-66)||(33709823-33709888)
chr4 (1-76)||(4440749-4440824)
chr4 (1-76)||(12494644-12494719)
chr4 (2-75)||(27450487-27450560)
chr4 (1-76)||(436123-436198)
chr4 (1-76)||(31960127-31960202)
chr4 (1-76)||(48622854-48622929)
chr4 (1-76)||(50286865-50286940)
chr4 (1-76)||(53707688-53707763)
chr4 (1-75)||(31458923-31458997)
chr4 (9-75)||(45205169-45205235)
chr4 (1-76)||(1777328-1777403)
chr4 (10-65)||(17900385-17900440)
chr4 (1-76)||(23906614-23906689)
chr4 (1-76)||(33191161-33191236)
chr4 (1-76)||(33227103-33227178)
chr4 (1-76)||(43433812-43433887)
chr4 (17-75)||(11389615-11389673)
chr4 (9-75)||(35690199-35690265)
chr4 (2-75)||(30853311-30853384)
chr4 (3-76)||(47265517-47265590)
chr4 (3-76)||(48174408-48174481)
chr4 (8-40)||(18966483-18966515)
chr4 (1-77)||(28236078-28236154)
chr4 (3-41)||(41192763-41192801)
chr4 (1-39)||(43070077-43070115)
chr4 (1-71)||(49987327-49987397)
chr4 (3-53)||(56375207-56375257)
chr4 (1-42)||(25967580-25967621)
chr4 (10-75)||(29398714-29398778)
chr4 (2-75)||(40933210-40933283)
chr4 (3-75)||(1211705-1211777)
chr4 (10-42)||(2588909-2588941)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-76)||(25758-25833)
[»] chr6 (16 HSPs)
chr6 (1-76)||(28085270-28085345)
chr6 (2-45)||(9568585-9568628)
chr6 (1-76)||(9706670-9706745)
chr6 (1-75)||(608054-608128)
chr6 (6-53)||(4948625-4948672)
chr6 (6-53)||(4955596-4955643)
chr6 (17-74)||(2079229-2079286)
chr6 (1-76)||(14030700-14030776)
chr6 (1-65)||(33998317-33998381)
chr6 (15-74)||(12134228-12134287)
chr6 (10-65)||(33083963-33084018)
chr6 (1-75)||(5258463-5258537)
chr6 (9-59)||(6293690-6293740)
chr6 (3-53)||(32755836-32755886)
chr6 (1-75)||(35043754-35043828)
chr6 (9-53)||(9594033-9594077)
[»] chr5 (14 HSPs)
chr5 (1-76)||(1275159-1275234)
chr5 (1-76)||(1287902-1287977)
chr5 (1-76)||(24178404-24178479)
chr5 (8-76)||(10639191-10639259)
chr5 (1-76)||(2075787-2075862)
chr5 (8-75)||(16347698-16347765)
chr5 (2-75)||(16454606-16454679)
chr5 (15-76)||(20318881-20318942)
chr5 (14-75)||(30588348-30588409)
chr5 (2-74)||(5305512-5305584)
chr5 (8-48)||(27998345-27998385)
chr5 (10-75)||(21093671-21093736)
chr5 (9-42)||(43558135-43558168)
chr5 (99-138)||(4991042-4991082)
[»] chr1 (21 HSPs)
chr1 (1-76)||(8671814-8671889)
chr1 (1-76)||(9592628-9592703)
chr1 (1-76)||(30202443-30202518)
chr1 (1-76)||(43240694-43240769)
chr1 (3-65)||(26016342-26016404)
chr1 (1-76)||(1210639-1210714)
chr1 (1-76)||(32231267-32231342)
chr1 (1-75)||(696164-696238)
chr1 (1-76)||(34792662-34792736)
chr1 (1-76)||(49347706-49347781)
chr1 (10-75)||(4379900-4379965)
chr1 (3-75)||(18469395-18469467)
chr1 (8-76)||(32083065-32083133)
chr1 (3-75)||(52442819-52442891)
chr1 (1-76)||(8391666-8391741)
chr1 (1-76)||(51441078-51441153)
chr1 (1-75)||(15085829-15085903)
chr1 (1-39)||(17275137-17275175)
chr1 (98-167)||(34619476-34619546)
chr1 (9-75)||(46226603-46226669)
chr1 (3-76)||(51601952-51602025)
[»] scaffold0018 (2 HSPs)
scaffold0018 (3-76)||(31362-31435)
scaffold0018 (10-74)||(44193-44257)
[»] chr7 (30 HSPs)
chr7 (1-76)||(31005117-31005192)
chr7 (1-76)||(33350119-33350194)
chr7 (1-76)||(34869314-34869389)
chr7 (1-76)||(35906514-35906589)
chr7 (1-76)||(49029170-49029245)
chr7 (1-74)||(13859321-13859392)
chr7 (17-75)||(25579400-25579458)
chr7 (1-75)||(32630490-32630564)
chr7 (9-75)||(47848569-47848635)
chr7 (3-76)||(11593854-11593927)
chr7 (15-75)||(36514532-36514592)
chr7 (1-76)||(12841588-12841663)
chr7 (1-76)||(36651888-36651963)
chr7 (1-76)||(36869602-36869677)
chr7 (1-76)||(37617838-37617913)
chr7 (1-75)||(38606900-38606974)
chr7 (9-75)||(42187366-42187432)
chr7 (9-53)||(14593678-14593722)
chr7 (9-53)||(16013201-16013245)
chr7 (10-66)||(30200281-30200337)
chr7 (1-69)||(39811858-39811926)
chr7 (1-76)||(33072848-33072923)
chr7 (15-75)||(28628260-28628317)
chr7 (1-75)||(45836793-45836867)
chr7 (8-53)||(5335839-5335884)
chr7 (1-42)||(24598459-24598500)
chr7 (10-75)||(38135538-38135603)
chr7 (91-138)||(2223079-2223127)
chr7 (3-75)||(43282300-43282372)
chr7 (1-53)||(44855485-44855537)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-76)||(4585-4660)


Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 495
Target Start/End: Complemental strand, 45236817 - 45236329
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttgaacnnnnnnnn--ttaaactttactttatcttt 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  45236817 gtctagtcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttgaacaaaaaaaaaattaaactttactttatcttt 45236718  T
Q  107 cgttataaaa-tagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatctaaatggccataatttatgggtaaaattcccaattcca 205  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45236717 cgttataaaaatagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatctaaatggccataatttatgggtaaaattcccaattcca 45236618  T
Q  206 tacctgaccagcttgtgatgaaacaaaagcaatagaagcaggtaaagtatatttcctattcttcttcatatgaggcaaagcagctttaatcatattcaaa 305  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45236617 tacctgaccagcttgtgatgaaacaaa-gcaatagaagcaggtaaagtatctttcctattcttcttcatatgaggcaaagcagctttaatcatattcaaa 45236519  T
Q  306 caacccatcaaattaacatcaatcgtaaacttgacatcactcaattccaacgcataaaacactccatgattcaacaacaacacatcaatgggtccagctt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45236518 caacccatcaaattaacatcaatcgtaaacttgacatcactcaattccaacgcataaaacactccatgattcaacaacaacacatcaatgggtccagctt 45236419  T
Q  406 catcagccactttcttcaccgcatcaaatatccttacttcaacgccggtggcgtgtttgacggagttcttagcttcttcgagtttggtga 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45236418 catcagccactttcttcaccgcatcaaatatccttacttcaacgccggtggcgtgtttgacggagttcttagcttcttcgagtttggtga 45236329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 25191346 - 25191273
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||  ||||||||| |||||||||||    
T  25191346 tatcatgtctagtcttaccactcatccagcgcaacatcctcatctctgctacacttactttactctcgtgttga 25191273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 52138769 - 52138701
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctc 69  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| ||||||    
T  52138769 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctc 52138701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33272341 - 33272416
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  33272341 cctatcatgtctagtcttaccactcatccaatgcaacatcctcatctctgctacacttacttgattctcatgttga 33272416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 2341028 - 2341102
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||  |||  |||| |||||||||| |||||    
T  2341028 ctatcatgtctagtcttaccacacatccaatgcaacatcctcatctccactatccttattttattctcgcgttga 2341102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 38850061 - 38849988
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||| |||||| || |||||| ||||||||||| ||||| ||||  ||||||| |||||||||||||    
T  38850061 tatcatgtctagtcttactactcatccagcgcaacatcctcatctctgctacacttacttgattctcgtgttga 38849988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51448022 - 51448097
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||  |||| || |||||| ||||||    
T  51448022 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttagttgattctcatgttga 51448097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 345032 - 345098
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||| |||||||||| |||||||  ||||||||||| || |||| |||||||||||||| ||||||    
T  345032 gtctagtcttaccacaaatccaacataacatcctaatttccgctatgcttactttattcttgtgttg 345098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 26490272 - 26490212
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| |||||    
T  26490272 tcttaccactcatccaacgcaacatcctcatctccgctacacttacttgattctcttgttg 26490212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 50249342 - 50249278
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgt 73  Q
    ||||| || |||||||||||||||| |||||| | ||||| |||| ||||| |||||||||||||    
T  50249342 gtctagtcctaccacacatccaacgaaacatcatcatctccgctatgcttattttattctcgtgt 50249278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22042 - 21995
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctc 48  Q
    ||||||||||||| ||||||||| |||||| ||||||||||| |||||    
T  22042 cctatcatgtctagtcttaccactcatccagcgcaacatcctcatctc 21995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 42510333 - 42510388
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttat 65  Q
    |||| ||||||||||||||||| |||||||||| ||||| |||| ||||| |||||    
T  42510333 tctagtcttaccacacatccaatgcaacatcctcatctctgctatgcttattttat 42510388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 653866 - 653924
Alignment:
Q  17 ttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||||||||||| ||||| ||||  |||| || ||||||||| ||||||||    
T  653866 ttaccacacatccaacgcaaaatcctcatctttgctacgcgtactttattatcgtgttg 653924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43308535 - 43308461
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||| |||||||||| || |||||||||| | |  |||||| || | ||| |||||||||||||||    
T  43308535 cctatcatgtctagtcttaccacaaattcaacgcaacaccttcgtctcggttacgattattttattctcgtgttg 43308461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 47542031 - 47542077
Alignment:
Q  7 atgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    ||||||| ||||||||| |||||||||||||||||| ||||| ||||    
T  47542031 atgtctagtcttaccactcatccaacgcaacatcctcatctctgcta 47542077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 53519555 - 53519481
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| |||||| | ||||||| |||||||||||||||||| || || ||||  || |||||| ||||||||||    
T  53519555 cctatcctgtctagtattaccactcatccaacgcaacatcctcatttccgctacactaactttactctcgtgttg 53519481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 54128331 - 54128273
Alignment:
Q  17 ttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||| |||| ||||||||||||| ||||| |||| |||||||| |||||| |||||    
T  54128331 ttaccactcatcaaacgcaacatcctcatctctgctaagcttacttgattctcatgttg 54128273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 28245392 - 28245331
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||| |||||||||||||||||| ||||  ||||  ||||||| |||||| ||||||    
T  28245392 tcttaccactcatccaacgcaacatcctcatctttgctacacttacttaattctcatgttga 28245331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 37788839 - 37788794
Alignment:
Q  91 actttactttatctttcgttataaaatagcttatacacaaacactt 136  Q
    |||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  37788839 actttattttatcttttgttataaaataacttatacataaacactt 37788794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 43695082 - 43695151
Alignment:
Q  5 tcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgtt 74  Q
    ||||||||  ||||||||  |||||||||||||||||| ||||| | ||  ||||||| |||||||||||    
T  43695082 tcatgtctggtcttaccattcatccaacgcaacatcctcatctctgttacacttacttgattctcgtgtt 43695151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 2128341 - 2128397
Alignment:
Q  90 aactttactttatctttcgttata-aaatagcttatacacaaacacttatggtataa 145  Q
    ||||||| ||||||||| |||||| |||||||||||||| |||| |||||| |||||    
T  2128341 aactttattttatcttttgttatagaaatagcttatacataaacgcttatgctataa 2128397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 45728101 - 45728041
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||| |||||| ||||||||||| ||||| ||||  ||||||| |||||| |||||    
T  45728101 tcttaccactcatccagcgcaacatcctcatctctgctacacttacttgattctcatgttg 45728041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46431984 - 46432024
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcc 41  Q
    |||||| |||||| ||||||||||||||||| |||||||||    
T  46431984 cctatcctgtctagtcttaccacacatccaatgcaacatcc 46432024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 47233911 - 47233955
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatct 47  Q
    ||||||||||| ||||||||| |||||||||||| ||||| ||||    
T  47233911 tatcatgtctagtcttaccactcatccaacgcaatatcctcatct 47233955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 431
Target Start/End: Complemental strand, 7825319 - 7824867
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttgaacnnnnnnnn------ttaaactttactttat 102  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||  ||              || |||||||||||||    
T  7825319 gtctagtcttaccacacatccaacgcaacatcctaatctctgctacgcttactttattctcatgttccacaaaaaagaaaaaaatttaactttactttat 7825220  T
Q  103 ctttcgttataaaa-tagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatctaaa--tggccataat---------ttatgggta 190  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||| |||  ||||||||||         ||||  |||    
T  7825219 cttttgttataaaaatagcttatacagaaacacttatggtataaacttcaaattaagctgtttatccaaacatggccataataaacataatttatctgta 7825120  T
Q  191 aaattcccaattccatacctgaccagcttgtgatgaaacaaaagcaatagaagcaggtaaagtatatttcctattcttcttcatatgaggcaaagcagct 290  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||| || ||||||||||||    
T  7825119 aaatttccaactccatacctgaccagcttgtgatgaaacaaaagcaatagaagcaggtaaagtatctttcctatt---cttcatttgcggcaaagcagct 7825023  T
Q  291 ttaatcatattcaaacaacccatcaaattaacatcaatcgtaaacttgacatcact---------------caattccaacgcataaaacactccatgat 375  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||               ||||||||||||||||||||| |||||||    
T  7825022 ttaatcatattcaaacaacccatcaagttaacatcaatcgtaaacttcacatcactcaattccattttctccaattccaacgcataaaacacaccatgat 7824923  T
Q  376 tcaacaacaacacatcaatgggtccagcttcatcagccactttcttcaccgcatca 431  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||    
T  7824922 tcaacaacaacacatcaatgggtccagcttcatcaaccgctttcttcacagcatca 7824867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36183420 - 36183345
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  36183420 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 36183345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38429853 - 38429779
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  |||||| || ||||||||||    
T  38429853 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctccgctacacttactctactctcgtgttg 38429779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 45077709 - 45077649
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctc 69  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||| ||||| |||||||||    
T  45077709 gtctagtcttaccacacatccaacgcaacatcctcatctcagctatgcttattttattctc 45077649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3866041 - 3865966
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||| | ||||| ||||  ||||||| |||||| ||||||    
T  3866041 cctatcatgtctagtcttaccactcatccaacgcaacatcatcatctctgctacacttacttgattctcatgttga 3865966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4807561 - 4807486
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||  |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  4807561 cctatcatgtctattcttaccattcatccaacgcaacatcctcatctctgctacacttacttaattctcatgttga 4807486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8180749 - 8180674
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||| ||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  8180749 cctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttga 8180674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 23714578 - 23714645
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| |||||||||||||||||| |||||| |||||||| |||| ||||| |||||| ||||||||    
T  23714578 tgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttg 23714645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 24102250 - 24102317
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| |||||||||||||||||| |||||| |||||||| |||| ||||| |||||| ||||||||    
T  24102250 tgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttg 24102317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41197541 - 41197615
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||| ||||||||| |||| | ||||||||||| ||||| ||||  ||||||||| ||||||||||    
T  41197541 cctatcatgtctagtcttaccactcatctagcgcaacatcctcatctccgctacacttactttactctcgtgttg 41197615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41763354 - 41763428
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| |||||| ||||||||| |||||| ||||||||||| ||||| ||||  ||||||||| ||||||||||    
T  41763354 cctatcttgtctagtcttaccactcatccatcgcaacatcctcatctccgctacacttactttactctcgtgttg 41763428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 11992421 - 11992494
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||| | ||||||| |||||| ||||||||||| ||||| ||||  ||||||||| |||||||||||    
T  11992421 tatcatgtctagtattaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttga 11992494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 19337176 - 19337237
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||||||||| |||||||| |||||  ||| ||||| ||||||||||||||||    
T  19337176 tcttaccacacatccaacgtaacatcctcatctccactacgcttattttattctcgtgttga 19337237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 451935 - 452010
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||| |||||||||| || ||||| ||||  ||||||| |||||| ||||||    
T  451935 cctatcatgtctagtcttaccactcatctaacgcaacatactcatctctgctacacttacttgattctcatgttga 452010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3243964 - 3244039
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||||||| || |||||| || |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  3243964 cctatcatgtgtagtcttactactcatccaacgcaacatccttatctctgctacacttacttgattctcatgttga 3244039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 2610490 - 2610422
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| ||||||||| ||||||||||| |||||| ||||| ||||  ||||||| |||||| ||||||    
T  2610490 tgtctagtcttaccactcatccaacgcagcatcctcatctctgctacacttacttgattctcatgttga 2610422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 9647927 - 9647970
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||    
T  9647927 tctagtcttaccacacatccaacgcaacatcctcatctctgcta 9647970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 9579015 - 9579053
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatc 40  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  9579015 ctatcatatctattcttaccacacatccaacgcaacatc 9579053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 9556689 - 9556722
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcct 42  Q
    |||||||||||||||||||||||| |||||||||    
T  9556689 gtctaatcttaccacacatccaacacaacatcct 9556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 36039183 - 36039122
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgt 71  Q
    ||||| ||| ||||||||||||| ||||||| | ||||| |||| | |||||||||||||||    
T  36039183 tctaaacttgccacacatccaacacaacatcttcatctctgctacgattactttattctcgt 36039122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38453002 - 38453043
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcct 42  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||    
T  38453002 cctatgatgtctagtcttaccactcatccaacgcaacatcct 38453043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39946826 - 39946751
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||||||||||    
T  39946826 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcgtgttga 39946751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 39953579 - 39953651
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||| |||||||||||||||||||||||||||| || ||||| |||| ||| |||||||  ||||||||    
T  39953579 tatcatgtttaatcttaccacacatccaacgcaacattctcatctctgctacgctaactttatgttcgtgttg 39953651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40813291 - 40813223
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctc 69  Q
    ||||| ||||||| ||||||||| |||||||| ||||||||||||||| ||||  ||||||||||||||    
T  40813291 cctattatgtctagtcttaccactcatccaacacaacatcctaatctctgctacacttactttattctc 40813223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36545116 - 36545041
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||| ||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  36545116 cctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttga 36545041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12492155 - 12492230
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| || || ||||  ||||| | |||||| ||||||    
T  12492155 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatatctgctacacttacatgattctcatgttga 12492230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30748428 - 30748354
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||||||| ||||||||||||||| |||||||| || || |||| || || |||||| || |||||    
T  30748428 cctatcatgtctaatctaaccacacatccaacgaaacatcctcatatctgctacgcctaatttattatcatgttg 30748354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 45512818 - 45512883
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||| ||||||||||||||||||| ||||| || ||||| |||| ||||| |||||| ||||||||    
T  45512818 tctagtcttaccacacatccaacgaaacattctcatctccgctatgcttattttattttcgtgttg 45512883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36395263 - 36395315
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||    
T  36395263 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgcta 36395315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36565554 - 36565622
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctc 69  Q
    |||||| |||||| ||||||||| ||||||||||| |||||| ||||| ||||  ||||||| ||||||    
T  36565554 cctatcctgtctagtcttaccactcatccaacgcatcatcctcatctctgctacacttacttgattctc 36565622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39760737 - 39760789
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||||| ||||||||| ||||||||||||||| ||||||||| ||||| ||||    
T  39760737 cctatcttgtctaatcctaccacacatccaacacaacatcctcatctctgcta 39760789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2796526 - 2796449
Alignment:
Q  1 cctatcatgtctaa--tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||||||||||   ||||||||| |||||| ||||||||||| ||||  ||||  ||||||| |||||||||||||    
T  2796526 cctatcatgtctatagtcttaccactcatccagcgcaacatcctcatctttgctacacttacttgattctcgtgttga 2796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 30456538 - 30456576
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  30456538 tcttaccacacatccaacgcaacatcctcatctctgcta 30456576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 29520620 - 29520583
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatct 47  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  29520620 tctagtcttaccacacatccaacgcaacatcctcatct 29520583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 16252895 - 16252863
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcct 42  Q
    ||||||||||||||||||||||| |||||||||    
T  16252895 tctaatcttaccacacatccaacacaacatcct 16252863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 42493627 - 42493663
Alignment:
Q  11 ctaatcttaccacacatccaacgcaacatcctaatct 47  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  42493627 ctaatcttaccacacaaccaacgcaacatcctcatct 42493663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33709888 - 33709823
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttatt 66  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||| ||||||    
T  33709888 cctatcatgtctagtcttaccacacatccaacgcaacatcatcatctctgctaggcttaatttatt 33709823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4440824 - 4440749
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||  ||||||| |||||| ||||||    
T  4440824 cctatcatgtctagtcttaccactcatcgaacgcaacatcctaatctctgctacacttacttgattctcatgttga 4440749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12494719 - 12494644
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  12494719 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 12494644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 27450487 - 27450560
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||  ||||||||| ||||||||||    
T  27450487 ctatcatgtctagtcttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttg 27450560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 436198 - 436123
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| |||||| || |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  436198 cctatcatgtctagtcttacgactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 436123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31960127 - 31960202
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  31960127 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 31960202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48622854 - 48622929
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  48622854 cctatcatgtctagtcttaccactcatccaaagcaacatcctcatctctgctacacttacttgattctcatgttga 48622929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50286940 - 50286865
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| ||||||||||||| |||| ||||| ||||  ||||||| |||||| ||||||    
T  50286940 cctatcatgtctagtcttaccactcatccaacgcaacttcctcatctctgctacacttacttgattctcatgttga 50286865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 53707763 - 53707688
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| |||||| || |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  53707763 cctatcatgtctagtcttactactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 53707688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31458997 - 31458923
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||| ||||||||| || ||||||||||||||| ||||  ||||  ||||||||||| ||||||||    
T  31458997 cctatcatgtctagtcttaccactcaaccaacgcaacatcctcatctgtgctacacttactttattttcgtgttg 31458923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 45205169 - 45205235
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||| ||||||||| |||||||| ||||||||| ||||| |||| |||||||| ||||||||||||    
T  45205169 gtctagtcttaccactcatccaacacaacatcctcatctccgctacgcttacttgattctcgtgttg 45205235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1777328 - 1777403
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||  ||||  ||||||| ||| || ||||||    
T  1777328 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctttgctatacttacttgattttcatgttga 1777403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 17900440 - 17900385
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttat 65  Q
    |||| |||||||||||||||||||||||||||| || || |||| |||||||||||    
T  17900440 tctagtcttaccacacatccaacgcaacatcctcatttctgctacgcttactttat 17900385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23906614 - 23906689
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| |||| |||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  23906614 cctatcttgtctagtcttgccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 23906689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33191161 - 33191236
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| | |||||||||||||| |||||| ||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  33191161 cctatcctatctaatcttaccactcatccagcgcaacatcctcatctctgctacacttacttgattctcatgttga 33191236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33227178 - 33227103
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||  ||||| | |||||| ||||||    
T  33227178 cctatcatgtctagtcttaccactcatccagcgcaacatcctcatctctgctacacttacatgattctcatgttga 33227103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43433887 - 43433812
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| |||| |||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  43433887 cctatcttgtctagtcttgccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 43433812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 11389673 - 11389615
Alignment:
Q  17 ttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||||||  ||||||||| ||||| |||| |||||||||||||||| ||||    
T  11389673 ttaccacacatccaatccaacatcctcatctctgctacgcttactttattctcgagttg 11389615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 35690265 - 35690199
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||| |||||| || |||||||||||||||||| ||||||||||  ||||||| |||||| |||||    
T  35690265 gtctagtcttactactcatccaacgcaacatcctcatctcggctacacttacttgattctcatgttg 35690199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 30853384 - 30853311
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||| |||||| |||||||| ||||||||| ||||||| | ||||| |||  ||||| |||||||||||||||    
T  30853384 ctatcttgtctagtcttaccatacatccaacacaacatcttcatctccgctgcgcttattttattctcgtgttg 30853311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 47265517 - 47265590
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||| ||||||||| |||||| ||||||||||| ||||  ||||  | ||||| |||||||||||||    
T  47265517 tatcatgtctagtcttaccactcatccagcgcaacatcctcatctttgctacacctacttgattctcgtgttga 47265590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 48174408 - 48174481
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||  ||||  ||||||| ||| || ||||||    
T  48174408 tatcatgtctagtcttaccactcatccaacgcaacatcctcatctttgctatacttacttgattttcatgttga 48174481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 18966515 - 18966483
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatc 40  Q
    |||||||||||||||||||||||||||||||||    
T  18966515 tgtctaatcttaccacacatccaacgcaacatc 18966483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28236154 - 28236078
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttgaa 77  Q
    |||||||| |||||||||||||  ||||||| ||| |||| ||||||| ||||  ||||||| |||||| |||||||    
T  28236154 cctatcatatctaatcttaccattcatccaatgcagcatcataatctctgctacacttacttgattctcatgttgaa 28236078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 41192801 - 41192763
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcc 41  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  41192801 tatcctgtctaatcataccacacatccaacgcaacatcc 41192763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43070077 - 43070115
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacat 39  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  43070077 cctatcctgtctaatcttaccacacatccaacccaacat 43070115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49987397 - 49987327
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgt 71  Q
    ||||||||||||| |||||| | |||| |||| ||||||||| ||||| |||| ||||| | |||||||||    
T  49987397 cctatcatgtctagtcttactaaacattcaacacaacatcctcatctctgctaagcttattatattctcgt 49987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 56375257 - 56375207
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||| |||||| ||||||||| |||||||||||||||||| ||||| ||||    
T  56375257 tatcttgtctagtcttaccactcatccaacgcaacatcctcatctctgcta 56375207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25967580 - 25967621
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcct 42  Q
    |||| |||||||| |||||||||||||||| |||||||||||    
T  25967580 cctaccatgtctagtcttaccacacatccatcgcaacatcct 25967621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 29398778 - 29398714
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||||| |||||| |||||||||| ||||| ||||  |||| ||||||||| |||||    
T  29398778 tctaatcttaccacaaatccaa-gcaacatcctcatctccgctacacttattttattctcatgttg 29398714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 40933210 - 40933283
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||| |  ||||||||||||| |||||||||||||| ||||  ||||  |||| |||| ||||||||||    
T  40933210 ctatcatgtattgtcttaccacacattcaacgcaacatcctcatctacgctacacttattttactctcgtgttg 40933283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 1211705 - 1211777
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||| | ||||||| ||||||  |||||||||| || || ||||  ||||||| ||||||||||||    
T  1211705 tatcatgtctagttttaccactcatccagtgcaacatcctcatatccgctacacttacttgattctcgtgttg 1211777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 2588941 - 2588909
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcct 42  Q
    |||| ||||||||||||||||||||||||||||    
T  2588941 tctagtcttaccacacatccaacgcaacatcct 2588909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25758 - 25833
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||  ||||||| |||||| ||||||    
T  25758 cctatcatgtctagtcttaccactcatccaacacaacatcctaatctctgctacacttacttgattctcatgttga 25833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 28085345 - 28085270
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  28085345 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 28085270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 9568628 - 9568585
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatcctaat 45  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  9568628 ctatcatgtctagtcttaccacacatccaacgcaacatcctaat 9568585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9706745 - 9706670
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| ||||||  |||||||||| ||||| ||||  ||||||||| |||||||||||    
T  9706745 cctatcatgtctagtcttaccactcatccagtgcaacatcctcatctccgctacacttactttactctcgtgttga 9706670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 608128 - 608054
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| | |||| ||||||||| ||||||||| |||||||| ||||| ||||  ||||||||||||||||||||    
T  608128 cctatcctatctagtcttaccactcatccaacggaacatcctcatctccgctacacttactttattctcgtgttg 608054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 4948625 - 4948672
Alignment:
Q  6 catgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  4948625 catgtctagtcttaccacacatccaaagcaacatcctaatctccgcta 4948672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 4955596 - 4955643
Alignment:
Q  6 catgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  4955596 catgtctagtcttaccacacatccaaagcaacatcctaatctccgcta 4955643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 2079286 - 2079229
Alignment:
Q  17 ttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgtt 74  Q
    |||||||||||||||| ||||||| | ||||| |||| ||||| ||||||||||||||    
T  2079286 ttaccacacatccaacacaacatcatcatctccgctacgcttattttattctcgtgtt 2079229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14030776 - 14030700
Alignment:
Q  1 cctatcatgtctaatctta-ccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||| |||| |||||| ||||||||||| ||||| ||||  ||||||||| |||||||||||    
T  14030776 cctatcctgtctagtcttaaccactcatccatcgcaacatcctcatctctgctacacttactttactctcgtgttga 14030700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33998317 - 33998381
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttat 65  Q
    |||||||  |||| |||||||||||||||||||||||||| | ||||| |||| ||||| |||||    
T  33998317 cctatcacatctagtcttaccacacatccaacgcaacatcttcatctctgctacgcttaatttat 33998381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 12134228 - 12134287
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgtt 74  Q
    |||| ||||||||||||| |||||| || ||||| |||| ||||| ||||||||||||||    
T  12134228 tcttgccacacatccaacacaacattctcatctctgctatgcttagtttattctcgtgtt 12134287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 33084018 - 33083963
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttat 65  Q
    |||| ||||||||||||||||||||| |||||| || || |||| |||||||||||    
T  33084018 tctagtcttaccacacatccaacgcagcatcctcatttctgctacgcttactttat 33083963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5258463 - 5258537
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| |||||| ||||||||| ||||||||||||||| || | ||| ||||  ||||||||  ||||||||||    
T  5258463 cctatcttgtctagtcttaccactcatccaacgcaacattctcacctccgctacacttactttgctctcgtgttg 5258537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 6293690 - 6293740
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggctta 59  Q
    ||||||| |||||||||||||||| ||||||||| ||||| |||| |||||    
T  6293690 gtctaattttaccacacatccaacacaacatcctcatctctgctatgctta 6293740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 32755886 - 32755836
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    ||||||||||| ||||||||| |||||||| ||||||||| ||||| ||||    
T  32755886 tatcatgtctagtcttaccactcatccaacacaacatcctcatctctgcta 32755836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35043754 - 35043828
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||||||||||||  |||||| ||||||||| | ||||| ||||  ||||||| | |||| |||||    
T  35043754 cctatcatgtctaatcttaccaatcatccagcgcaacatcttcatctccgctacacttacttgactctcatgttg 35043828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 9594033 - 9594077
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    ||||| ||||||||| |||||||||||||||||| ||||| ||||    
T  9594033 gtctagtcttaccactcatccaacgcaacatcctcatctccgcta 9594077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1275234 - 1275159
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||| |||||||| ||||||||| |||||||||||||||||| ||||| |||| |||||||| |||||| ||||||    
T  1275234 cctaccatgtctagtcttaccactcatccaacgcaacatcctcatctctgctatgcttacttgattctcatgttga 1275159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1287902 - 1287977
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  1287902 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 1287977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24178479 - 24178404
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||||||| || ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  24178479 cctatcatgtatagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 24178404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 10639259 - 10639191
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  10639259 tgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 10639191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2075787 - 2075862
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| |||||| || |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  2075787 cctatcttgtctagtcttacaactcatccaacgcaacatcctcatctctgctacacttacttaattctcatgttga 2075862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 16347698 - 16347765
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| | ||||||||||    
T  16347698 tgtctagtcttaccactcatccaacgcaacatcctcatctccgctacacttacttaactctcgtgttg 16347765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 16454679 - 16454606
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||| | |||||| |||||||| ||| |||||| ||||| ||||  ||||||||| ||||||||||    
T  16454679 ctatcatgtctagttttaccaaacatccaatgcatcatcctcatctctgctacacttactttactctcgtgttg 16454606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 20318942 - 20318881
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  20318942 tcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 20318881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 30588409 - 30588348
Alignment:
Q  14 atcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||||||| ||||||||||||  ||||  ||| ||||| |||||||||||||||    
T  30588409 atcttaccacacatcccacgcaacatccttgtctccactatgcttattttattctcgtgttg 30588348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 5305584 - 5305512
Alignment:
Q  2 ctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgtt 74  Q
    ||||| |||||| |||||||||||||||||||||||||||   |||  ||||  |||| ||||||||||||||    
T  5305584 ctatcttgtctagtcttaccacacatccaacgcaacatccccgtctttgctattcttattttattctcgtgtt 5305512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 27998385 - 27998345
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctc 48  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  27998385 tgtctagtcttaccacacatccaacgcaacatcctcatctc 27998345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 21093736 - 21093671
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||| ||||||||||||| |||||||||||||| || ||  |||  |||| |||||||||||||||    
T  21093736 tctagtcttaccacacatacaacgcaacatcctcatatccactacacttattttattctcgtgttg 21093671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 43558135 - 43558168
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcct 42  Q
    ||||| ||||||||||||||||||||||||||||    
T  43558135 gtctagtcttaccacacatccaacgcaacatcct 43558168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 4991042 - 4991082
Alignment:
Q  99 ttatctttcgttataaaa-tagcttatacacaaacacttat 138  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  4991042 ttatcttttgttataaaaatagcttatacacaaacacttat 4991082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8671889 - 8671814
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  8671889 cctatcatgtctagtcttaccactcatccaacgcaacatccttatctctgctacacttacttgattctcatgttga 8671814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9592703 - 9592628
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  9592703 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 9592628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30202443 - 30202518
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  30202443 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 30202518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43240694 - 43240769
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  43240694 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 43240769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 26016404 - 26016342
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttat 65  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  26016404 tatcctgtctagtcttaccacacatccaacgcaacatcctcatctctgctacgcttactttat 26016342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1210714 - 1210639
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  1210714 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 1210639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32231267 - 32231342
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||||||||||||| |||| | ||||||||||| |||||  |||  ||||||| |||||||||||||    
T  32231267 cctatcatgtctaatcttaccactcatctagcgcaacatcctcatctctactacacttacttgattctcgtgttga 32231342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 696238 - 696164
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| |||||| ||||||||| |||||| ||||||||||| ||||| ||||  ||||||||| ||||||||||    
T  696238 cctatcctgtctagtcttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttg 696164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34792662 - 34792736
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||  ||| ||| |||||||||||||    
T  34792662 cctatcatgtctagtcttaccactcatccagcgcaacatcctcatctctgctacactt-cttgattctcgtgttga 34792736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 49347706 - 49347781
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||  ||||  ||||||| |||||| ||||||    
T  49347706 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctttgctacacttacttgattctcatgttga 49347781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 4379965 - 4379900
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||| |||||||||||||||||| ||||||||| ||||| |||| ||||  |||||| ||||||||    
T  4379965 tctagtcttaccacacatccaacacaacatcctcatctcagctaagctttatttattttcgtgttg 4379900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 18469395 - 18469467
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||| ||||||||| ||| ||||||| |||| | ||||| |||| | |||||| ||||||||||||    
T  18469395 tatcatgtctagtcttaccactcatacaacgcagcatcgtcatctccgctacgtttacttgattctcgtgttg 18469467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 32083065 - 32083133
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| ||||||||| |||||| ||||||||||| ||||| ||||  | ||||||| |||||||||||    
T  32083065 tgtctagtcttaccactcatccagcgcaacatcctcatctccgctacacatactttactctcgtgttga 32083133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 52442819 - 52442891
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||| |||||| |||||||||||||||||| ||||||||| || || |||| ||||| |||||| | ||||||    
T  52442819 tatcttgtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttg 52442891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8391741 - 8391666
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| ||| || ||||||||| |||||||| ||||||| | ||||| ||||  ||||||||| |||||||||||    
T  8391741 cctatcttgtgtagtcttaccactcatccaacacaacatcttcatctccgctacacttactttactctcgtgttga 8391666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51441078 - 51441153
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| | ||||| |||||||||| ||||| ||||  || |||| |||||| ||||||    
T  51441078 cctatcatgtctagtcttaccactcgtccaatgcaacatcctcatctctgctacactcacttgattctcatgttga 51441153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15085903 - 15085829
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| | |||| ||||||||| | |||| ||||||||||| ||||| ||||  ||||||||| ||||||||||    
T  15085903 cctatcctatctagtcttaccactcgtccagcgcaacatcctcatctccgctacacttactttactctcgtgttg 15085829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17275175 - 17275137
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacat 39  Q
    |||||||||| || |||||||||||||||||||||||||    
T  17275175 cctatcatgtgtagtcttaccacacatccaacgcaacat 17275137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 34619476 - 34619546
Alignment:
Q  98 tttatctttcgttata-aaatagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatc 167  Q
    ||||||||| |||||| |||| ||||||||| || || ||||| |||||  ||||||||||||||||||||    
T  34619476 tttatcttttgttatagaaatggcttatacataagcaattatgctataagctgcaaattaagctgtttatc 34619546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 46226603 - 46226669
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||| ||| ||||| |||||||||||||||| | ||||| ||||  ||||||| ||||||||||||    
T  46226603 gtctagtctcaccactcatccaacgcaacatcatcatctccgctaaacttacttgattctcgtgttg 46226669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 51602025 - 51601952
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||| ||||||||| |||| ||||||||||||| || ||  |||  ||||||| |||||| ||||||    
T  51602025 tatcatgtctagtcttaccactcatctaacgcaacatcctcatatctactacacttacttgattctcatgttga 51601952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 31435 - 31362
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||| ||||  ||||||| |||||| ||||||    
T  31435 tatcctgtctagtcttaccactcatccaacgcaacatcctaatctctgctacacttacttgattctcatgttga 31362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 44193 - 44257
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgtt 74  Q
    |||| ||||||| |||||||||||||||||||| ||||| |||  ||||| ||||||||||||||    
T  44193 tctagtcttaccgcacatccaacgcaacatcctcatctccgctgcgcttattttattctcgtgtt 44257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31005192 - 31005117
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  31005192 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 31005117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33350119 - 33350194
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  33350119 cctatcatgtctagtcttaccactcatccaaggcaacatcctcatctctgctacacttacttgattctcatgttga 33350194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34869389 - 34869314
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||| |||||  |||  ||||||| |||||| ||||||    
T  34869389 cctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctactacacttacttgattctcatgttga 34869314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35906514 - 35906589
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  35906514 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 35906589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 49029245 - 49029170
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||| ||||||||| |||||||| ||||| ||||  ||||||| |||||| ||||||    
T  49029245 cctatcatgtctagtcttaccactcatccaacgtaacatcctcatctctgctacacttacttgattctcatgttga 49029170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13859321 - 13859392
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgtt 74  Q
    ||||||||||||| ||||||||| | |||||||||||||||| ||||| ||||  ||||||| |||||||||||    
T  13859321 cctatcatgtctagtcttaccactcgtccaacgcaacatcctcatctctgcta--cttacttgattctcgtgtt 13859392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 25579400 - 25579458
Alignment:
Q  17 ttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||||||||||||||||| |||||  ||| ||||| |||||||||||||||    
T  25579400 ttaccacacatccaacgcaacatcctcatctcctctacgcttattttattctcgtgttg 25579458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32630564 - 32630490
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||| ||||||||| |||||| | ||||||||| ||||| ||||  ||||||||| ||||||||||    
T  32630564 cctatcatgtctagtcttaccactcatccagctcaacatcctcatctccgctacacttactttactctcgtgttg 32630490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 47848635 - 47848569
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||| |||||||||||||||||| ||||||||| |||||  |||| |||| |||||||||||||||    
T  47848635 gtctagtcttaccacacatccaacacaacatcctcatctcccctagacttattttattctcgtgttg 47848569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 11593927 - 11593854
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||| |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  11593927 tatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttga 11593854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 36514532 - 36514592
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||||||||||||||||||| ||||| ||||  |||| |||||| ||||||||    
T  36514532 tcttaccacacatccaacgcaacatcctcatctctgctacacttaatttattttcgtgttg 36514592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12841588 - 12841663
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| | ||||||| |||||||| ||||||||| ||||| ||||  ||||||| |||||| ||||||    
T  12841588 cctatcatgtctagttttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttga 12841663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36651963 - 36651888
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| | ||  ||||||| |||||| ||||||    
T  36651963 cctatcctgtctagtcttaccactcatccaacgcaacatcctcatctctgttacacttacttgattctcatgttga 36651888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36869602 - 36869677
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||| | ||||||||| |||||||| ||||||||| ||||| ||||  ||||||| |||| ||||||||    
T  36869602 cctatcatgtccagtcttaccactcatccaacacaacatcctcatctctgctacacttacttgattcacgtgttga 36869677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37617913 - 37617838
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||| ||| |||||| ||||||    
T  37617913 cctatcttgtctagtcttaccactcatccaacgcaacatcctcatctctgctacacttgcttgattctcatgttga 37617838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38606974 - 38606900
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||||||||||| ||||||||| |||||| ||||||||  | ||||| ||||  ||||||||| ||||||||||    
T  38606974 cctatcatgtctagtcttaccactcatccagcgcaacattatcatctccgctacacttactttactctcgtgttg 38606900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 42187432 - 42187366
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    ||||| |||||| ||||||||||| ||||||||| ||||| |||| ||||||| |||||| ||||||    
T  42187432 gtctagtcttactacacatccaacacaacatcctcatctccgctacgcttactctattcttgtgttg 42187366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14593722 - 14593678
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    ||||| |||||||||||||||||||||||||||| ||||| ||||    
T  14593722 gtctagtcttaccacacatccaacgcaacatcctcatctctgcta 14593678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 16013245 - 16013201
Alignment:
Q  9 gtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    ||||| |||||||||||||||||||||||||||| ||||| ||||    
T  16013245 gtctagtcttaccacacatccaacgcaacatcctcatctctgcta 16013201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 30200281 - 30200337
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttatt 66  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||  |||| ||||||    
T  30200281 tctaatcttaccacacatccaacacaacatcctcatctctgctacacttagtttatt 30200337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39811926 - 39811858
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctc 69  Q
    ||||||| ||||| ||||||||||||||||| |||||||||| || || |||| ||||  |||||||||    
T  39811926 cctatcacgtctagtcttaccacacatccaaagcaacatcctcatatccgctacgcttgttttattctc 39811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33072923 - 33072848
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    |||||| |||||| ||||||||| |||||||||||||||| | ||||| ||||  |||| || |||||| ||||||    
T  33072923 cctatcttgtctagtcttaccactcatccaacgcaacatcatcatctctgctacacttatttgattctcatgttga 33072848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 28628260 - 28628317
Alignment:
Q  15 tcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||| |||||||| |||||||   |||||| |||| |||||||||||||||||||||    
T  28628260 tcttaccatacatccaaggcaacat---aatctctgctacgcttactttattctcgtgttg 28628317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 45836793 - 45836867
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||| |||||| ||||||||| |||||| ||||||||||| ||||| |||   ||||||| | ||||||||||    
T  45836793 cctatcttgtctactcttaccactcatccagcgcaacatcctcatctccgctgcacttacttgactctcgtgttg 45836867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 5335884 - 5335839
Alignment:
Q  8 tgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    |||||| ||||||||||||| |||||||||||||| ||||| ||||    
T  5335884 tgtctagtcttaccacacattcaacgcaacatcctcatctctgcta 5335839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24598459 - 24598500
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcct 42  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  24598459 cctatcatgtctaaacttaccactcatccaacacaacatcct 24598500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 38135538 - 38135603
Alignment:
Q  10 tctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||||||||||||||  || ||||| ||||| |||| ||||  |||||||| ||||||    
T  38135538 tctaatcttaccacacatccaacaaaagatcctcatctccgctacgcttgttttattctagtgttg 38135603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 2223127 - 2223079
Alignment:
Q  91 actttactttatctttcgttata-aaatagcttatacacaaacacttat 138  Q
    ||||| |||||||||| |||||| |||||||||||||| ||||||||||    
T  2223127 acttttctttatcttttgttatagaaatagcttatacataaacacttat 2223079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 43282372 - 43282300
Alignment:
Q  3 tatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttg 75  Q
    |||||||||||  ||||||||||||| ||||||||||||| || || | |  ||||| |||||||| ||||||    
T  43282372 tatcatgtctagacttaccacacatctaacgcaacatcctcatatccgttgtgcttaatttattcttgtgttg 43282300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44855485 - 44855537
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggcta 53  Q
    ||||||||||||| ||||||||| |||||| | ||||||||| ||||| ||||    
T  44855485 cctatcatgtctagtcttaccactcatccagcacaacatcctgatctctgcta 44855537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4585 - 4660
Alignment:
Q  1 cctatcatgtctaatcttaccacacatccaacgcaacatcctaatctcggctaggcttactttattctcgtgttga 76  Q
    ||||||||||||| ||||||||  |||||||||||||||||| || || | ||   |||||| |||||||||||||    
T  4585 cctatcatgtctagtcttaccattcatccaacgcaacatcctcatatctgttaaatttacttgattctcgtgttga 4660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University