View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_high_17 (Length: 421)
Name: NF11268_high_17
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 412
Target Start/End: Complemental strand, 6232827 - 6232433
Alignment:
| Q |
21 |
agaggaactccgatgattatgtcaccagaagcagtgaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatga |
120 |
Q |
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| T |
6232827 |
agaggaactccgatgattatgtcaccagaagcagtgaatgatagtgtgtatgaatcgtcagccgatatatgggctcttggttgcgccgtcgtggagatga |
6232728 |
T |
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| Q |
121 |
ttaccggagaacccgc---atggaatgagtcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaattatc |
217 |
Q |
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| T |
6232727 |
ttaccggagaacccgccgcatggaatgaatcagatatgttgatgttgacgattcgaattggtgttggagaagaattgccaaaaattccagaggaattatc |
6232628 |
T |
|
| Q |
218 |
acaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgtt |
317 |
Q |
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| T |
6232627 |
acaagaaggaaaagattttttagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgtt |
6232528 |
T |
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| Q |
318 |
gaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
412 |
Q |
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| T |
6232527 |
gaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
6232433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 364
Target Start/End: Complemental strand, 6222034 - 6221699
Alignment:
| Q |
38 |
tatgtcaccagaagcagtgaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgca |
137 |
Q |
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| T |
6222034 |
tatgtcaccagaagcggtgaacgagagtgtttatgaatcaccggcagatatatgggctcttggttgcgctattgtggagatggctacgggtaaacatgca |
6221935 |
T |
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| Q |
138 |
tggaatg-----ag----tcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaattatcacaagaaggaa |
228 |
Q |
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| T |
6221934 |
tggaatgtaagcagcggttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaa |
6221835 |
T |
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| Q |
229 |
aagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttc |
328 |
Q |
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| T |
6221834 |
aagattttctcgaaaagtgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaaacatgagtttatctcaggtgatgaaactgtttc |
6221735 |
T |
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| Q |
329 |
agttgtaaatgagttagttgatgagttgccattgtc |
364 |
Q |
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| T |
6221734 |
attggtgaaagagttgatcaatgagttgccattgtc |
6221699 |
T |
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