View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11268_high_19 (Length: 409)
Name: NF11268_high_19
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 51845083 - 51844691
Alignment:
| Q |
1 |
gttatcgagatgtaactcaccgaggaaacgaagatttgttaatgagtctggtatatttcctgagaatttattattgttgagccatactttcttgagagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51845083 |
gttatcgagatgtaactcaccgaggaaacgaagatttgttaatgagtctggtatatttcctgagaatttattattgttgagccatactttcttgagagaa |
51844984 |
T |
|
| Q |
101 |
cctaaatgagagaaaaaatctggaggaataggtcctgagaattggtttaatgataaataaagagctttaagagcaccaagtttgttgaattcaggaattg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51844983 |
cctaaatgagaaaaaaaatctggaggaataggtcctgagaattggtttaatgataaataaagagctttaagagcaccaagtttgttgaattcaggaattg |
51844884 |
T |
|
| Q |
201 |
caccagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccagagaggcctaaatcagtaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51844883 |
caccagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccagagaggcctaaatcggtaag |
51844784 |
T |
|
| Q |
301 |
atgaagacttgagacgacattgtcgaaacaaatgacaccaacccatcttgaagaacatggattttgattaggaagccatgatgcaagagattg |
393 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51844783 |
atgaagacttgagatgacattgtcgaaacaaatgacaccaacccatcttgaagaacatggattttgattaggaagccatgatgcaagagattg |
51844691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University