View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_high_20 (Length: 395)
Name: NF11268_high_20
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 49912094 - 49911724
Alignment:
| Q |
11 |
cataggaacgagaacaagttagtatcaagtagaaaagtaaatgtgttgtaccaataaataaa-taaataagagattgtgaaattgctcaagccttctggg |
109 |
Q |
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| T |
49912094 |
cataggaacgagaacaagttagtatcaagtagaaaagtaaatgtgtagtaccaataaataaaataaataagagattgtgaagttgctcaagccttccggg |
49911995 |
T |
|
| Q |
110 |
gtaatcgtattcagtctgataaattgagcaaaatcttcaatttaggtctctactctttgcttgattgcaacttatctaatgatgatttgggaatgaactc |
209 |
Q |
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| T |
49911994 |
ataatcgtattcagtctgataaatggagcaaaatcttcaatttaggtctctactctttgcttgattgcaacttatctaatgatgatttgggaatgaactc |
49911895 |
T |
|
| Q |
210 |
taccaacaggtctatcttatttggtggtgttgttagatatttagaaccaaatcaaaatcattcaactataaattttaaccgattcgaacataatctagcg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49911894 |
taccaacaggtctatcttatttggtggtgttgttagatatttagaaccaagtcaaaatcattcaactataaattttaaccgattcgaacataatctagcg |
49911795 |
T |
|
| Q |
310 |
tggctttgaaattcaattaatgatttttacattaaaataaacaaggtatcaatatcaaacaacatgaatat |
380 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49911794 |
tggcttcgaaattcaattaacgatttttacattaaaataaacaaggtatcaatatcaaacaacatgaatat |
49911724 |
T |
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