View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11268_high_34 (Length: 249)

Name: NF11268_high_34
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11268_high_34
NF11268_high_34
[»] chr6 (16 HSPs)
chr6 (1-236)||(11525363-11525598)
chr6 (1-236)||(7585899-7586137)
chr6 (133-234)||(21128521-21128622)
chr6 (70-236)||(17608076-17608247)
chr6 (161-217)||(19289049-19289105)
chr6 (68-114)||(14051237-14051283)
chr6 (68-114)||(14069918-14069964)
chr6 (176-217)||(19689048-19689089)
chr6 (176-215)||(18378585-18378624)
chr6 (187-217)||(17048042-17048072)
chr6 (84-160)||(30119972-30120053)
chr6 (181-217)||(9933356-9933392)
chr6 (181-217)||(17741370-17741406)
chr6 (181-217)||(17745401-17745437)
chr6 (176-208)||(18383970-18384002)
chr6 (181-217)||(18499095-18499131)
[»] chr7 (17 HSPs)
chr7 (1-236)||(8998648-8998883)
chr7 (1-236)||(13174320-13174554)
chr7 (70-236)||(11086774-11086940)
chr7 (70-212)||(19710793-19710933)
chr7 (176-214)||(9709625-9709663)
chr7 (181-217)||(29590518-29590554)
chr7 (84-161)||(44280921-44281002)
chr7 (176-217)||(13880432-13880473)
chr7 (176-217)||(15088817-15088858)
chr7 (176-217)||(30026219-30026260)
chr7 (176-208)||(2913419-2913451)
chr7 (181-217)||(3476078-3476114)
chr7 (181-217)||(8934030-8934066)
chr7 (176-208)||(10882971-10883003)
chr7 (181-217)||(12733921-12733957)
chr7 (176-208)||(13730508-13730540)
chr7 (181-217)||(26209303-26209339)
[»] chr2 (22 HSPs)
chr2 (1-236)||(21025180-21025415)
chr2 (4-236)||(24814273-24814515)
chr2 (86-218)||(24793717-24793847)
chr2 (161-236)||(23392387-23392463)
chr2 (134-233)||(20646239-20646337)
chr2 (133-236)||(22755767-22755869)
chr2 (142-236)||(19312659-19312752)
chr2 (133-214)||(1084346-1084426)
chr2 (134-217)||(19297317-19297399)
chr2 (4-77)||(24793868-24793940)
chr2 (84-161)||(18768638-18768720)
chr2 (84-161)||(28721048-28721130)
chr2 (84-161)||(28731636-28731718)
chr2 (176-217)||(9015104-9015145)
chr2 (176-217)||(13963743-13963784)
chr2 (181-217)||(17968883-17968919)
chr2 (181-217)||(19497683-19497719)
chr2 (171-215)||(19540719-19540763)
chr2 (101-161)||(21172181-21172241)
chr2 (181-217)||(24275541-24275577)
chr2 (176-208)||(25829430-25829462)
chr2 (176-208)||(38781706-38781738)
[»] chr3 (31 HSPs)
chr3 (1-231)||(51988780-51989013)
chr3 (1-232)||(17022196-17022426)
chr3 (4-218)||(13148439-13148652)
chr3 (1-236)||(22151416-22151651)
chr3 (138-236)||(41046017-41046115)
chr3 (82-236)||(10529565-10529724)
chr3 (133-214)||(11908755-11908835)
chr3 (133-214)||(12752391-12752471)
chr3 (133-233)||(31113615-31113715)
chr3 (133-214)||(51341339-51341419)
chr3 (141-214)||(49990569-49990641)
chr3 (134-217)||(27173318-27173400)
chr3 (67-162)||(37412842-37412943)
chr3 (1-77)||(41045913-41045989)
chr3 (34-113)||(51341222-51341301)
chr3 (84-161)||(934067-934149)
chr3 (176-214)||(20627269-20627307)
chr3 (84-161)||(29460927-29461008)
chr3 (84-161)||(29471779-29471860)
chr3 (176-214)||(47208041-47208079)
chr3 (25-121)||(49990446-49990539)
chr3 (181-217)||(2246908-2246944)
chr3 (85-121)||(11908864-11908900)
chr3 (181-217)||(13198899-13198935)
chr3 (181-217)||(14581672-14581708)
chr3 (176-208)||(14969645-14969677)
chr3 (181-217)||(23680073-23680109)
chr3 (181-217)||(24052310-24052346)
chr3 (176-208)||(31303720-31303752)
chr3 (176-208)||(41495305-41495337)
chr3 (176-212)||(47405243-47405279)
[»] chr1 (29 HSPs)
chr1 (1-236)||(23065118-23065338)
chr1 (1-236)||(22019506-22019740)
chr1 (1-185)||(20255235-20255419)
chr1 (1-231)||(19038176-19038391)
chr1 (1-236)||(28380163-28380398)
chr1 (1-236)||(26547932-26548167)
chr1 (1-190)||(5929872-5930046)
chr1 (1-236)||(22655647-22655883)
chr1 (1-236)||(22643065-22643301)
chr1 (1-236)||(44201181-44201381)
chr1 (149-236)||(52350396-52350483)
chr1 (161-233)||(28474548-28474620)
chr1 (134-217)||(45070339-45070421)
chr1 (154-236)||(19170033-19170115)
chr1 (3-77)||(52350520-52350594)
chr1 (176-214)||(22599892-22599930)
chr1 (176-217)||(22154205-22154246)
chr1 (70-126)||(52350486-52350542)
chr1 (84-161)||(147971-148052)
chr1 (84-161)||(154046-154127)
chr1 (84-161)||(5974133-5974214)
chr1 (176-214)||(25448243-25448281)
chr1 (181-217)||(675915-675951)
chr1 (176-208)||(1900664-1900696)
chr1 (180-208)||(2268863-2268891)
chr1 (181-217)||(20799409-20799445)
chr1 (181-217)||(22609693-22609729)
chr1 (67-213)||(34255221-34255372)
chr1 (176-208)||(36134505-36134537)
[»] chr4 (28 HSPs)
chr4 (1-232)||(36209775-36210005)
chr4 (1-236)||(14778119-14778339)
chr4 (86-236)||(33378672-33378822)
chr4 (149-236)||(17993489-17993576)
chr4 (133-233)||(19244289-19244388)
chr4 (134-233)||(18006700-18006798)
chr4 (134-217)||(16819037-16819119)
chr4 (134-217)||(18774341-18774423)
chr4 (4-72)||(33378579-33378646)
chr4 (3-77)||(17993613-17993687)
chr4 (176-214)||(13575892-13575930)
chr4 (176-217)||(37435266-37435307)
chr4 (171-208)||(56034879-56034916)
chr4 (70-126)||(17993579-17993635)
chr4 (83-161)||(40470324-40470406)
chr4 (176-214)||(22675298-22675336)
chr4 (84-161)||(25657595-25657676)
chr4 (84-161)||(40454068-40454149)
chr4 (176-214)||(45833721-45833759)
chr4 (84-164)||(47151795-47151879)
chr4 (176-208)||(3395951-3395983)
chr4 (176-208)||(9141188-9141220)
chr4 (176-208)||(12601426-12601458)
chr4 (176-208)||(14904073-14904105)
chr4 (176-208)||(19620846-19620878)
chr4 (134-214)||(29121659-29121738)
chr4 (181-217)||(49001659-49001695)
chr4 (181-217)||(55651867-55651903)
[»] chr5 (20 HSPs)
chr5 (1-236)||(40228824-40229059)
chr5 (1-236)||(20214853-20215087)
chr5 (1-234)||(40032508-40032741)
chr5 (1-236)||(1915583-1915800)
chr5 (134-236)||(13405384-13405486)
chr5 (133-236)||(20167825-20167927)
chr5 (142-232)||(23478669-23478758)
chr5 (134-217)||(36096870-36096952)
chr5 (161-217)||(36095413-36095469)
chr5 (168-214)||(33933623-33933669)
chr5 (19-130)||(11207824-11207932)
chr5 (83-214)||(11994152-11994281)
chr5 (1-75)||(13405282-13405358)
chr5 (84-161)||(1109491-1109572)
chr5 (176-206)||(21910854-21910884)
chr5 (70-213)||(3245210-3245358)
chr5 (133-214)||(11207724-11207804)
chr5 (84-160)||(36084295-36084376)
chr5 (181-217)||(13534258-13534294)
chr5 (181-217)||(32754395-32754431)
[»] chr8 (26 HSPs)
chr8 (1-236)||(29379741-29379975)
chr8 (1-236)||(17518812-17519046)
chr8 (82-233)||(23270905-23271056)
chr8 (1-236)||(40003358-40003593)
chr8 (70-236)||(18534817-18534983)
chr8 (70-236)||(8032249-8032415)
chr8 (133-236)||(28903764-28903867)
chr8 (133-214)||(21541271-21541351)
chr8 (133-233)||(19461468-19461567)
chr8 (133-233)||(19559146-19559245)
chr8 (176-217)||(16189323-16189364)
chr8 (176-217)||(18120910-18120951)
chr8 (34-111)||(45567762-45567839)
chr8 (176-208)||(16207579-16207611)
chr8 (84-161)||(20160977-20161058)
chr8 (84-161)||(20196409-20196490)
chr8 (25-121)||(21541149-21541242)
chr8 (142-214)||(1237960-1238031)
chr8 (181-217)||(3833278-3833314)
chr8 (181-217)||(3844058-3844094)
chr8 (181-217)||(3844349-3844385)
chr8 (176-208)||(17267795-17267827)
chr8 (181-217)||(20259326-20259362)
chr8 (181-217)||(21045956-21045992)
chr8 (181-217)||(22211096-22211132)
chr8 (176-208)||(39693859-39693891)
[»] scaffold0010 (2 HSPs)
scaffold0010 (1-236)||(117448-117682)
scaffold0010 (1-236)||(61902-62121)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-236)||(61391-61611)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-236)||(481491-481710)
scaffold0002 (4-218)||(156350-156563)
scaffold0002 (181-217)||(117621-117657)
[»] scaffold0655 (1 HSPs)
scaffold0655 (4-218)||(5291-5504)
[»] scaffold0018 (1 HSPs)
scaffold0018 (4-236)||(6217-6459)
[»] scaffold0280 (1 HSPs)
scaffold0280 (133-236)||(17504-17606)
[»] scaffold1321 (1 HSPs)
scaffold1321 (4-236)||(629-872)
[»] scaffold1263 (1 HSPs)
scaffold1263 (4-236)||(822-1065)
[»] scaffold0185 (1 HSPs)
scaffold0185 (133-236)||(9607-9709)
[»] scaffold0017 (1 HSPs)
scaffold0017 (116-233)||(40014-40131)
[»] scaffold0090 (2 HSPs)
scaffold0090 (134-236)||(5485-5586)
scaffold0090 (134-217)||(1105-1187)
[»] scaffold0012 (1 HSPs)
scaffold0012 (131-233)||(7317-7418)
[»] scaffold0544 (1 HSPs)
scaffold0544 (116-217)||(9619-9719)
[»] scaffold0269 (1 HSPs)
scaffold0269 (133-214)||(7599-7679)
[»] scaffold0050 (1 HSPs)
scaffold0050 (161-236)||(35522-35597)
[»] scaffold0908 (1 HSPs)
scaffold0908 (133-214)||(3611-3691)
[»] scaffold0207 (4 HSPs)
scaffold0207 (133-214)||(20931-21011)
scaffold0207 (86-121)||(10966-11001)
scaffold0207 (86-121)||(20867-20902)
scaffold0207 (161-214)||(11057-11110)
[»] scaffold0752 (1 HSPs)
scaffold0752 (134-217)||(2312-2394)
[»] scaffold0422 (1 HSPs)
scaffold0422 (83-212)||(11983-12117)
[»] scaffold0211 (1 HSPs)
scaffold0211 (25-111)||(15447-15533)
[»] scaffold0254 (1 HSPs)
scaffold0254 (133-203)||(22335-22404)
[»] scaffold0485 (1 HSPs)
scaffold0485 (176-217)||(9115-9156)
[»] scaffold0132 (1 HSPs)
scaffold0132 (133-214)||(37784-37863)
[»] scaffold0011 (1 HSPs)
scaffold0011 (34-111)||(164760-164837)
[»] scaffold0290 (1 HSPs)
scaffold0290 (176-215)||(18361-18400)
[»] scaffold0767 (1 HSPs)
scaffold0767 (84-161)||(5013-5094)
[»] scaffold0227 (1 HSPs)
scaffold0227 (176-214)||(22992-23030)
[»] scaffold0210 (1 HSPs)
scaffold0210 (179-217)||(1965-2003)
[»] scaffold0003 (1 HSPs)
scaffold0003 (176-214)||(89812-89850)
[»] scaffold0414 (1 HSPs)
scaffold0414 (83-214)||(6877-7014)
[»] scaffold0297 (1 HSPs)
scaffold0297 (161-206)||(17307-17352)
[»] scaffold0163 (1 HSPs)
scaffold0163 (84-160)||(36535-36616)
[»] scaffold0023 (1 HSPs)
scaffold0023 (176-205)||(103888-103917)
[»] scaffold0861 (1 HSPs)
scaffold0861 (176-208)||(4694-4726)
[»] scaffold0774 (1 HSPs)
scaffold0774 (181-217)||(6061-6097)
[»] scaffold0604 (1 HSPs)
scaffold0604 (181-217)||(269-305)
[»] scaffold0547 (1 HSPs)
scaffold0547 (189-217)||(1233-1261)
[»] scaffold0154 (1 HSPs)
scaffold0154 (181-217)||(36060-36096)
[»] scaffold0084 (1 HSPs)
scaffold0084 (176-208)||(49649-49681)
[»] scaffold0083 (1 HSPs)
scaffold0083 (176-208)||(25739-25771)
[»] scaffold0026 (2 HSPs)
scaffold0026 (176-208)||(8228-8260)
scaffold0026 (176-208)||(60347-60379)
[»] scaffold0022 (2 HSPs)
scaffold0022 (176-208)||(39743-39775)
scaffold0022 (176-208)||(137803-137835)
[»] scaffold0007 (1 HSPs)
scaffold0007 (181-217)||(59005-59041)
[»] scaffold0004 (1 HSPs)
scaffold0004 (176-208)||(30618-30650)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11525598 - 11525363
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11525598 tgaatcttctgatcaacttgtagattctgatgttatacagcttctgaacaaatggcttctgaatgtcttgcttctgacggatttgcttctgatgacgtca 11525499  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  11525498 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttcagatgcttctaggtttctcttcttgttgattcatttgctctcttttg 11525399  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  11525398 ttcttccaagacctattatgttgatcaactttgtct 11525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7586137 - 7585899
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgtt-atacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatga---c 96  Q
    ||||||| |||| |||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  7586137 tgaatctcctgaacaactt-cagtttctgatgtttatatagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgatgac 7586039  T
Q  97 gtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctct 196  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||  |||||||| |||||||| |||||||||||||||||||||||||||||| |||    
T  7586038 gtcatcagatgcattttggcttcagacgcactatagacttcagatgttgatttcttcagatgcttctaggtttctcttcttgttgattcatttgctttct 7585939  T
Q  197 tttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7585938 tttgttcttccaagacctattatgttgatcaactttgtct 7585899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 21128521 - 21128622
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    ||||||||  ||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  21128521 acttcagacacagttttcttcagatgcttctaggtttctcttcttgttgattcctttgctctcttttgttcttccaagacctattatgttgattaacttt 21128620  T
Q  233 gt 234  Q
    ||    
T  21128621 gt 21128622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 17608247 - 17608076
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttaga-cttcagatgcagatttcttgagatgctttt 163  Q
    |||||||| | | |||||||||||||||||||||     || |||||||| ||||||  |||||| | | ||||||| | || |||||| |||||||||     
T  17608247 gcttctgatgaacttgcttctgatgacgtcatcacttcagaggcactttgtcttcaggagcacttcaaaacttcagacgtagttttcttcagatgcttt- 17608149  T
Q  164 aggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  17608148 aggcttctctttttgttgattcatttgctctcttttgttcttccaagaccttttaaaatgatcaactttgtct 17608076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 19289105 - 19289049
Alignment:
Q  161 tttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  19289105 tttaggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctatt 19289049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 14051283 - 14051237
Alignment:
Q  68 ttgcttctgacggatttgcttctgatgacgtcatcagatgcactttg 114  Q
    |||||||||| ||| |||||||||||||||||||||| |||||||||    
T  14051283 ttgcttctgatggacttgcttctgatgacgtcatcaggtgcactttg 14051237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 14069964 - 14069918
Alignment:
Q  68 ttgcttctgacggatttgcttctgatgacgtcatcagatgcactttg 114  Q
    |||||||||| ||| |||||||||||||||||||||| |||||||||    
T  14069964 ttgcttctgatggacttgcttctgatgacgtcatcaggtgcactttg 14069918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 19689048 - 19689089
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  19689048 ttgttgattcatttgctctcttttgttcttccagaacctatt 19689089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 18378585 - 18378624
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagaccta 215  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  18378585 ttgttgattcctttactctcttttgttcttccaagaccta 18378624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 17048042 - 17048072
Alignment:
Q  187 tttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||||    
T  17048042 tttgctctcttttgttcttccaagacctatt 17048072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 30120053 - 30119972
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgct 160  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||  ||||||| |||| |||||| |||||||    
T  30120053 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgct 30119972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 9933392 - 9933356
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9933392 gattcctttgctctctattgttcttccaagacctatt 9933356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 17741406 - 17741370
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  17741406 gattcctttgctctctattgttcttccaagacctatt 17741370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 17745437 - 17745401
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||  ||||||||||||||||||||    
T  17745437 gattcatttgctctccattgttcttccaagacctatt 17745401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 18383970 - 18384002
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  18383970 ttgttgattcctttgctctcttttgttcttcca 18384002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 18499095 - 18499131
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  18499095 gattcctttgctctctattgttcttccaagacctatt 18499131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 8998883 - 8998648
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8998883 tgaatcttctgatcaacttgcagtttctaatgttatacagcttctgaacaattggcttctgaaggtcttgcttatgaaggatttgcttctgatgacgtca 8998784  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  8998783 tcagatgcattttggcttcagacgcacttcagacttcagatgcagatttcttcagatgcttctaggtttctcttcttgttgattcctttgctctcttttg 8998684  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  8998683 ttcttccaagacctattatgttgatcaactttgtct 8998648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 13174554 - 13174320
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||  |||||||||||||||||||||    
T  13174554 tgaatcttctgatcaactt-cagtttctgatgatatacagcttctgaacaattagcttctgaaggtcttgcttctgatagatttgcttctgatgacgtca 13174456  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    | ||||||| |||||||||||| |||||||  |||||||| ||||||||||| |||||||| |||||||||||||||| |||||| || |||||||||||    
T  13174455 ttagatgcattttggcttcagaagcactttcaacttcagaggcagatttcttcagatgcttgtaggtttctcttcttgatgattccttagctctcttttg 13174356  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||  ||||| ||||||||||    
T  13174355 ttcttccaagacctattaaattgattaactttgtct 13174320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 11086940 - 11086774
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggttt 169  Q
    |||||||| ||  ||||||||||||||||||||| ||||| |||||||| |||||||||||  |||||||| ||||||||||| | |||||| |||||||    
T  11086940 gcttctgaaggtcttgcttctgatgacgtcatcaaatgcattttggctttagacgcactttcaacttcagaggcagatttcttcatatgcttctaggttt 11086841  T
Q  170 ctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  11086840 ctcttcttgttgattcctttgctctcttttgttcttccaagacctattaaattgatcaactttgtct 11086774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 19710933 - 19710793
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggttt 169  Q
    ||||||||  || |||||||||||||||||||||| || ||| |  ||||||  ||| |||| |||||||| |||||||| || ||||||||| ||| ||    
T  19710933 gcttctgatagacttgcttctgatgacgtcatcaggtgtactgtatcttcaggagcatttta-acttcagaggcagattttttcagatgcttt-aggctt 19710836  T
Q  170 ctcttcttgttgattcatttgctctcttttgttcttccaagac 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  19710835 ctctttttgttgattcatttgctctcttttgttcttccaagac 19710793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 9709663 - 9709625
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  9709663 ttgttgattcatttgctctctattgttcttccaagacct 9709625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 29590518 - 29590554
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29590518 gattcatttgctctctattgttcttccaagacctatt 29590554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 44280921 - 44281002
Alignment:
Q  84 tgcttctgatgacgtca-----tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    |||||||||||||||||     ||||||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  44280921 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 44281002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 13880432 - 13880473
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||| ||||||||||||||||||||||  |||||||    
T  13880432 ttgttgattcctttgctctcttttgttcttccagaacctatt 13880473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 15088817 - 15088858
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||| ||||||||||||||||||||||  |||||||    
T  15088817 ttgttgattcctttgctctcttttgttcttccagaacctatt 15088858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 30026219 - 30026260
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||| ||||||||||||||||||||||  |||||||    
T  30026219 ttgttgattcctttgctctcttttgttcttccataacctatt 30026260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 2913451 - 2913419
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  2913451 ttgttgattcctttgctctcttttgttcttcca 2913419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 3476114 - 3476078
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  3476114 gattcctttgctctctattgttcttccaagacctatt 3476078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 8934030 - 8934066
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  8934030 gattcctttgctctctattgttcttccaagacctatt 8934066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 10883003 - 10882971
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  10883003 ttgttgattcctttgctctcttttgttcttcca 10882971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 12733957 - 12733921
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  12733957 gattcctttgctctctattgttcttccaagacctatt 12733921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 13730540 - 13730508
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  13730540 ttgttgattcctttgctctcttttgttcttcca 13730508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 26209339 - 26209303
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  26209339 gattcctttgctctctattgttcttccaagacctatt 26209303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 21025415 - 21025180
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  21025415 tgaatcttctgatcaacttgcagtttctgatgttatacagcttctgaacaattggcttctaaaggtcttgcttttgacggatttgcttctgatgacgtca 21025316  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||| ||||||||||||||| ||||||||||||||    
T  21025315 tcagatgcattttggcttcagacgcactttagacttcatatgcagatttcttcatatgcttctaggtttatcttcttgttgattcctttgctctcttttg 21025216  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    || |||||||||||||||||||||||||||||||||    
T  21025215 ttgttccaagacctattatgttgatcaactttgtct 21025180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 24814515 - 24814273
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctga--------cggat----ttgcttctg 91  Q
    |||||||||| ||||| ||| ||||| || |||||||||||||| ||||||||||||||||| |||||| ||||        | |||    |  ||||||    
T  24814515 atcttctgatgaactt-cagtttctggtgatatacagcttctgatcaaatggcttctgaaggacttgctactgaacttgcttctgataatctcacttctg 24814417  T
Q  92 atgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgc 191  Q
    |||||||||||||||||| |||||||||||  |||||||  |||||||| ||||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  24814416 atgacgtcatcagatgcattttggcttcaggagcactttcaacttcagaagcagatttcttcagatgc-tttaggtttctctt-ttgttgattcctttgc 24814319  T
Q  192 tctcttttgttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||    
T  24814318 tctcttttgttcttccaagacctattaaatttgatcaactttgtct 24814273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 24793847 - 24793717
Alignment:
Q  86 cttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattc 185  Q
    |||||||||||||||||||||||| |||||||||||  |||||||  |||||||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  24793847 cttctgatgacgtcatcagatgcattttggcttcaggagcactttcaacttcagaggcagatttcttcagatgc-tttaggtttctctt-ttgttgattc 24793750  T
Q  186 atttgctctcttttgttcttccaagacctatta 218  Q
     ||||||||||||||||||||||||||||||||    
T  24793749 ctttgctctcttttgttcttccaagacctatta 24793717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 23392463 - 23392387
Alignment:
Q  161 tttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatg-ttgatcaactttgtct 236  Q
    |||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  23392463 tttaggcttctccttttgttgattcttttgctctcttttgttcttccaagacctattaagattgatcaactttgtct 23392387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 20646337 - 20646239
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttg 233  Q
    ||||||| |||| |||||| ||||||||| ||||| ||||| ||| || ||| |||||||||||||||||||||||||||||||   |||||||||||||    
T  20646337 cttcagacgcagttttcttcagatgcttt-aggttcctcttattgatggttcctttgctctcttttgttcttccaagacctattgaattgatcaactttg 20646239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 22755767 - 22755869
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    |||||||| | || |||||| ||||||||| |||||  |||||||| |||||  ||||||||| ||||||||||||||||||||||  ||||||||||||    
T  22755767 acttcagacgtagttttcttcagatgcttt-aggttcttcttcttgatgatttctttgctctcgtttgttcttccaagacctattaaattgatcaacttt 22755865  T
Q  233 gtct 236  Q
    ||||    
T  22755866 gtct 22755869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 19312752 - 19312659
Alignment:
Q  142 gcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||| |||||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||   ||| ||||||||||||    
T  19312752 gcagttttcttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctattgaattggtcaactttgtct 19312659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 1084346 - 1084426
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| |||  |||||| ||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1084346 acttcagaggcaattttcttcagatgcttt-aggcttctcttcttgctgattcctttgctctcttttgttcttccaagacct 1084426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 19297399 - 19297317
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| || ||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  19297399 cttcagacgcagtttccttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctatt 19297317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 24793940 - 24793868
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctga 77  Q
    |||||||||| ||||| ||| ||||| || |||||| ||||||| ||||||||||||||||| |||||| ||||    
T  24793940 atcttctgatgaactt-cagtttctggtgatatacaacttctgatcaaatggcttctgaaggacttgctactga 24793868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 18768720 - 18768638
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||  ||||||| |||| |||||| ||||||||    
T  18768720 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgctt 18768638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 28721130 - 28721048
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||  ||||||| |||| |||||| ||||||||    
T  28721130 tgcttctgatgacgtcatcactccagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgctt 28721048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 28731718 - 28731636
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||  ||||||| |||| |||||| ||||||||    
T  28731718 tgcttctgatgacgtcatcactccagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgctt 28731636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 9015145 - 9015104
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||| ||||||||||||||||||||||  |||||||    
T  9015145 ttgttgattcctttgctctcttttgttcttccagaacctatt 9015104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 13963784 - 13963743
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||| ||||||||||||||||||||||  |||||||    
T  13963784 ttgttgattcctttgctctcttttgttcttccagaacctatt 13963743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 17968919 - 17968883
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  17968919 gattcctttgctctctattgttcttccaagacctatt 17968883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 19497719 - 19497683
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  19497719 gattcctttgctctctattgttcttccaagacctatt 19497683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 19540719 - 19540763
Alignment:
Q  171 tcttcttgttgattcatttgctctcttttgttcttccaagaccta 215  Q
    |||| |||||||||| || |||||||||||||||||||| |||||    
T  19540719 tctttttgttgattccttagctctcttttgttcttccaaaaccta 19540763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 21172241 - 21172181
Alignment:
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||  |||||||| ||||||||  ||||||| |||| |||||| ||||||||    
T  21172241 tcagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgctt 21172181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 24275541 - 24275577
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  24275541 gattcctttgctctctattgttcttccaagacctatt 24275577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 25829430 - 25829462
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  25829430 ttgttgattcctttgctctcttttgttcttcca 25829462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 38781706 - 38781738
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    ||||||||||| |||||||||||||||||||||    
T  38781706 ttgttgattcaattgctctcttttgttcttcca 38781738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 51989013 - 51988780
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51989013 tgaatcttctaatcaacttgcagtttctgatgttatacagcttctgaacaaatgggttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 51988914  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggt---ttctcttcttgttgattcatttgctctctt 197  Q
    ||| ||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||   |||||||||||||||||| |||||||||||    
T  51988913 tcatatgcattttggcttcagacgcactttagacttcaaatgctgatttcttcagatgcttctaggtttcttctcttcttgttgattcctttgctctctt 51988814  T
Q  198 ttgttcttccaagacctattatgttgatcaactt 231  Q
    ||||||||||||||||||||||||||||||||||    
T  51988813 ttgttcttccaagacctattatgttgatcaactt 51988780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 17022196 - 17022426
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||| || |||||||||||||||||||||||  |||||||||||| ||||||||||||  |||||||||||||||||||||    
T  17022196 tgaatcttctgatcaactt-cagtttttgatgttatacagcttctgaacagttggcttctgaagttcttgcttctgatagatttgcttctgatgacgtca 17022294  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||| ||||| || ||||||||| |||||||  ||||| || ||||||||||| |||||||| |||||||||||||||| |||||| || |||||||||||    
T  17022295 tcaaatgcatttaggcttcagaagcactttcaacttccgaggcagatttcttcagatgcttctaggtttctcttcttgatgattccttagctctcttttg 17022394  T
Q  201 ttcttccaagacctattatgttgatcaacttt 232  Q
    ||||||||||||||||||  ||||| ||||||    
T  17022395 ttcttccaagacctattaaattgattaacttt 17022426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 13148439 - 13148652
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatc 102  Q
    |||||||||||||||| ||| |||||  | |||||||||||||| ||||| |||||||||||| |||||||||||   | |  ||| |||||||||||||    
T  13148439 atcttctgatcaactt-cagtttctggcgatatacagcttctgatcaaattggcttctgaaggacttgcttctgataaactcacttttgatgacgtcatc 13148537  T
Q  103 agatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgtt 202  Q
    ||||||| |||||||||||| |||||||  |||||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  13148538 agatgcattttggcttcagaagcactttcaacttcagaggcagatttcttcagatgcttt-aggtttctcttcttgttgattcctttgctctcttttgtt 13148636  T
Q  203 cttccaagacctatta 218  Q
    ||||||||||||||||    
T  13148637 cttccaagacctatta 13148652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22151416 - 22151651
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtc 99  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||   | |  ||||||||||| ||    
T  22151416 tgaatcttctgatcaactt-cagtttctggtgttatacagcttctgatcaaattggcttctgaaggtcttgcttctgataaactcacttctgatgacatc 22151514  T
Q  100 atcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctctttt 199  Q
    |||||||||| |||||||||||| |||||||  |||||| | ||||| ||||| ||||||||| ||||||||||| |||||||||| |||||||||||||    
T  22151515 atcagatgcattttggcttcagaagcactttcaacttcaaaggcagaattcttcagatgcttt-aggtttctctttttgttgattcctttgctctctttt 22151613  T
Q  200 gttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    ||| || ||||||||||| |  ||||||||||||||||    
T  22151614 gtttttacaagacctattaaatttgatcaactttgtct 22151651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 41046017 - 41046115
Alignment:
Q  138 agatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||| |||||||| |||||||||||||  |||||||| |||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  41046017 agatgcagatttcttcagatgcttataggtttctcttcacgttgattcctttgctctcttttgtttttccaagacctattaaattgatcaactttgtct 41046115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 10529565 - 10529724
Alignment:
Q  82 tttgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttaga-cttcagatgcagatttcttgagatgcttttaggtttctcttc 175  Q
    ||||||||||||||||||||||     || |||||||| ||||||  |||||  | | ||||| | |||| |||||| ||||| ||||||| ||||||||    
T  10529565 tttgcttctgatgacgtcatcacttcagaggcactttgtcttcaggagcactccataacttcacacgcagttttcttcagatg-ttttaggcttctcttc 10529663  T
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||   ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  10529664 ttgttgatatctttgctctcttttgttcttccaagacctattaaattgatcaactttgtct 10529724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 11908835 - 11908755
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  11908835 acttcagaggcagatttcttcagatgcttt-aggcttctctttttgttgattcctttgctctcttttgttcttccaagacct 11908755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 12752471 - 12752391
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  12752471 acttcagaggcagatttcttcagatgcttt-aggcttctctttttgttgattcttttgctctcttttgttcttccaagacct 12752391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 31113715 - 31113615
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcattt-gctctcttttgttcttccaagacctattatgttgatcaactt 231  Q
    |||||||| |||| |||||| ||||||||| ||||| ||||||||| |||||  ||| ||| |||||||||||||||||||||||||  |||||||||||    
T  31113715 acttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatgattttttttgctttcttttgttcttccaagacctattaaattgatcaactt 31113617  T
Q  232 tg 233  Q
    ||    
T  31113616 tg 31113615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 51341339 - 51341419
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||| | |||||||| || ||||||||| ||| ||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  51341339 acttcaaaggcagattttttcagatgcttt-aggcttctctttttgttaattcttttgctctcttttgttcttccaagacct 51341419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 49990569 - 49990641
Alignment:
Q  141 tgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||||| ||||||||| ||| ||||||| ||||||| |  |||||||||| |||||||||||||||||    
T  49990569 tgcagatttctttagatgcttt-aggcttctctttttgttgaattttttgctctctattgttcttccaagacct 49990641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 27173318 - 27173400
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| |||||| ||||| |||||| || ||||| ||| || ||  |||||||||||||||||||||||||||||||    
T  27173318 cttcagacgcagttttcttcagatg-ttttagattcctctttttgatggtttctttgctctcttttgttcttccaagacctatt 27173400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 37412842 - 37412943
Alignment:
Q  67 cttgcttctgacg-gatttgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgct 160  Q
    ||||||||||||| | ||||||||||||||||||||||     || |||||||| ||||||  |||||| | ||||||||||||| |||||| ||| |||    
T  37412842 cttgcttctgacgagctttgcttctgatgacgtcatcacttcagaggcactttgtcttcaggagcacttcaaacttcagatgcagttttcttcagaagct 37412941  T
Q  161 tt 162  Q
    ||    
T  37412942 tt 37412943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41045913 - 41045989
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatg-ttatacagcttctgaacaaatggcttctgaaggtcttgcttctga 77  Q
    ||||||| ||||||||||| ||| |||||||| ||||| ||||||||||||| | |||| ||| ||||||||||||||    
T  41045913 tgaatctcctgatcaactt-cagtttctgatgattatatagcttctgaacaattagcttatgagggtcttgcttctga 41045989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 51341222 - 51341301
Alignment:
Q  34 tatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatcagatgcacttt 113  Q
    ||||||||||||||  |||| ||||||||  | |||||||||||   | |||||||| ||||||||||||| ||||||||    
T  51341222 tatacagcttctgatgaaatagcttctgatagacttgcttctgataaacttgcttctaatgacgtcatcaggtgcacttt 51341301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 934067 - 934149
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||  ||||||| |||| |||||| ||||||||    
T  934067 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgctt 934149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 20627307 - 20627269
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20627307 ttgttgattcctttgctctctattgttcttccaagacct 20627269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 29461008 - 29460927
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  29461008 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 29460927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 29471860 - 29471779
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  29471860 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 29471779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 47208041 - 47208079
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  47208041 ttgttgattcatttgctctctattgttcttccaatacct 47208079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 49990446 - 49990539
Alignment:
Q  25 ttctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcag 121  Q
    ||||| || ||||||||||||||  |||| ||||||||  | ||||||||| |   | |||||||||||||||||||||| |||| |||| ||||||    
T  49990446 ttctggtgatatacagcttctgatgaaatagcttctgatagacttgcttctaa---acttgcttctgatgacgtcatcaggtgcattttgtcttcag 49990539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 2246908 - 2246944
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  2246908 gattcctttgctctctattgttcttccaagacctatt 2246944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 11908900 - 11908864
Alignment:
Q  85 gcttctgatgacgtcatcagatgcactttggcttcag 121  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  11908900 gcttctgatgacgtcatcaggtgcactttgtcttcag 11908864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 13198935 - 13198899
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  13198935 gattcctttgctctctattgttcttccaagacctatt 13198899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 14581672 - 14581708
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  14581672 gattcctttgctctctattgttcttccaagacctatt 14581708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 14969645 - 14969677
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||||||||||||| ||||||||||||    
T  14969645 ttgttgattcatttgctctcgtttgttcttcca 14969677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 23680109 - 23680073
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  23680109 gattcctttgctctctattgttcttccaagacctatt 23680073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 24052346 - 24052310
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  24052346 gattcctttgctctctattgttcttccaagacctatt 24052310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 31303720 - 31303752
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  31303720 ttgttgattcttttgctctcttttgttcttcca 31303752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 41495305 - 41495337
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  41495305 ttgttgattcctttgctctcttttgttcttcca 41495337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 47405279 - 47405243
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagac 212  Q
    |||||||||| |||||||||| |||||||||||||||    
T  47405279 ttgttgattcctttgctctctattgttcttccaagac 47405243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23065118 - 23065338
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||    
T  23065118 tgaatcttctaatcaacttgcagtttctgatgttatacagcttctgaacaaatggcttctgaaggtcttgc---------------ttctgatgacgtca 23065202  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    | ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  23065203 ttagatgcattttggcttcagacgcactttagacttcagatgctgatttcttcagatgcttctaggtttctcttcttgttgattcctttgctctcttttg 23065302  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  23065303 ttcttccaagacctattatgttgatcaactttgtct 23065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22019506 - 22019740
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||  ||||| || |||| ||||||||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||    
T  22019506 tgaatcttctgatcaactt-caatttctggtgatatatagcttctgaacaattggcttctgaaggtcttgcttctgatagattcgcttctgatgacgtca 22019604  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| |||||||||||| || ||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22019605 tcagatgcattttggcttcagaagccctttcaacttcagaggcagatttcttcagatgcttttaggtttctcttcttgttgattcctttgctctcttttg 22019704  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||  ||||||||||||||||    
T  22019705 ttcttccaagacctattaaattgatcaactttgtct 22019740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 20255235 - 20255419
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20255235 tgaatcttctgatcaacttgcagtttctggtgttatacagcttctgaacaattggcttctgaaggtcttgcttctgaaggatttgcttctgatgacgtca 20255334  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattc 185  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  20255335 tcagatgcattttggcttcagacgcactttcaacttcagaggcagatttcttcagatgcttctaggtttctcttcttgttgattc 20255419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 19038176 - 19038391
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||               ||||||||||||||    
T  19038176 tgaatattctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtattgc---------------ttctgatgacgtca 19038260  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||||||| | |||||| ||||||||||||||||||||||| |||||| |||||||    
T  19038261 tcagatgcattttggcttcagacgcactttagactttagatgctgatttcttcatatgcttctaggtttctcttcttgttgattcctttgctttcttttg 19038360  T
Q  201 ttcttccaagacctattatgttgatcaactt 231  Q
    |||||||||||||||||||||||||||||||    
T  19038361 ttcttccaagacctattatgttgatcaactt 19038391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28380163 - 28380398
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgtt-atacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtc 99  Q
    ||||||| ||||||||||| ||| ||||| |||| ||| | ||||| ||||| ||||||||||||||||||||| |||  ||||||||||||||||||||    
T  28380163 tgaatctcctgatcaactt-cagtttctggtgtttatataacttctaaacaattggcttctgaaggtcttgcttatgatagatttgcttctgatgacgtc 28380261  T
Q  100 atcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctctttt 199  Q
    |||||||||| | ||||||||||||||||||  |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  28380262 atcagatgcattctggcttcagacgcactttcaacttcagaggcagatttcttcagatgcttctaggtttctcttcttgttgattcctttgctctctttt 28380361  T
Q  200 gttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||| |||||||||||  |||||||| |||||||    
T  28380362 gttcttctaagacctattaaattgatcaagtttgtct 28380398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26548167 - 26547932
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtc 99  Q
    |||||||||| |||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||   | |  ||||||||||||||    
T  26548167 tgaatcttcttatcaactt-cagtttctggtgttatacagcttctgatcaaattggcttctgaaggtcttgcttctgataaactcacttctgatgacgtc 26548069  T
Q  100 atcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctctttt 199  Q
    | |||||||| |||||||||||| |||||||  |||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  26548068 agcagatgcattttggcttcagaagcactttcaacttcagaggcagatttcttcagatgcttt-aggtttctcttcttgttgattcctttgctctctttt 26547970  T
Q  200 gttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    |||||||||||||||||| |  ||||||||||||||||    
T  26547969 gttcttccaagacctattaaatttgatcaactttgtct 26547932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 5929872 - 5930046
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||               ||||||||| ||||    
T  5929872 tgaatcttcttatcaacttgcagattctgatgttgtacagcttctgaacaaatggcttctgaaggtcttgc---------------ttctgatgatgtca 5929956  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttg 190  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  5929957 tcagatgcactttgccttcagacgcactttaaacttcagatgcagatttcttcagatgcttctaggtttctcttcttgttgattcctttg 5930046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22655647 - 22655883
Alignment:
Q  1 tgaatcttctgatcaacttgcagattct-gatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgt 98  Q
    ||||||||||||||||||| ||| |||| | || |||||||||||||| ||||| |||||||||||| ||||||||| |   | |  |||||||||||||    
T  22655647 tgaatcttctgatcaactt-cagtttcttggtgatatacagcttctgatcaaattggcttctgaaggacttgcttctaataaactcacttctgatgacgt 22655745  T
Q  99 catcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttt 198  Q
    ||||||||||| |||||||||||  ||||| |  |||||| | ||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||    
T  22655746 catcagatgcattttggcttcaggagcactctcaacttcataggcagatttcttcaaatgcttt-aggtttctcttcttgttgattcctttgctctcttt 22655844  T
Q  199 tgttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    ||||||||||||||||||| |  ||||||||||||||||    
T  22655845 tgttcttccaagacctattaaatttgatcaactttgtct 22655883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22643065 - 22643301
Alignment:
Q  1 tgaatcttctgatcaacttgcagattct-gatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgt 98  Q
    ||||||||||||||||||| ||  |||| | || |||||||||||||| || || |||||||||||| |||||||||||   | |  ||| |||||||||    
T  22643065 tgaatcttctgatcaactt-caatttcttggtgatatacagcttctgatcatattggcttctgaaggacttgcttctgataaactcacttttgatgacgt 22643163  T
Q  99 catcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttt 198  Q
    ||||||||||| |||||||||||  |||||||  |||||||| || |||||||| ||||||||| |||||||||||||| ||||||| |||||| |||||    
T  22643164 catcagatgcattttggcttcaggagcactttcaacttcagaggccgatttcttcagatgcttt-aggtttctcttctttttgattcctttgctttcttt 22643262  T
Q  199 tgttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    ||||||||||||||||||| |  ||||||||||||||||    
T  22643263 tgttcttccaagacctattaaatttgatcaactttgtct 22643301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44201181 - 44201381
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||               ||||||||||||||||||    
T  44201181 tgaatcttcttatcaacttgcagattctgatgttgtacagcttctgaacaaatggcttctgaaggtc---------------ttgcttctgatgacgtca 44201265  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||||||||||||||||||||||||| |||||                |||||||| ||||||||   |||||||||||||||| ||||||||||    
T  44201266 tcagatgcactttggcttcagacgcactttaaacttc----------------agatgcttctaggtttc---tcttgttgattcatttcctctcttttg 44201346  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||||||||||||||||| |||||||||||||||||    
T  44201347 ttcttccaagacctatta-gttgatcaactttgtct 44201381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 52350483 - 52350396
Alignment:
Q  149 tcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||| |||||||| |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  52350483 tcttcagatgcttctaggtttctcttcacgttgattcctttgctctcttttgttcttccaagacctattaaattgatcaactttgtct 52350396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 28474548 - 28474620
Alignment:
Q  161 tttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttg 233  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||  |||||||||||||    
T  28474548 tttaggttcctcttcttgatgatttctttgctctcttttgttcttccaagacctattaaattgatcaactttg 28474620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 45070421 - 45070339
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| |||||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  45070421 cttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctatt 45070339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 19170115 - 19170033
Alignment:
Q  154 agatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||   ||||||| |||||||    
T  19170115 agatgctttaaggcttctctttttgttgattcctttgctctcttttgttcttccaagacctactaaaatgatcaattttgtct 19170033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 52350594 - 52350520
Alignment:
Q  3 aatcttctgatcaacttgcagattctgatgtta-tacagcttctgaacaaatggcttctgaaggtcttgcttctga 77  Q
    ||||| ||||||||||| ||| ||||||||||  || ||||||||||||| | |||||||||||||||||||||||    
T  52350594 aatctcctgatcaactt-cagtttctgatgtttgtatagcttctgaacaattagcttctgaaggtcttgcttctga 52350520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 22599930 - 22599892
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  22599930 ttgttgattcatttgctctcttttgttcttccaaaacct 22599892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 22154205 - 22154246
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  22154205 ttgttgattcatttgctctcttttgttcttccagaacctatt 22154246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 52350542 - 52350486
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcagacgca 126  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||| ||||||| |||    
T  52350542 gcttctgaaggtcttgcttctgatgacgtcatcagatgcattttgtcttcagaggca 52350486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 148052 - 147971
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  148052 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 147971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 154127 - 154046
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  154127 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 154046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 5974133 - 5974214
Alignment:
Q  84 tgcttctgatgacgtca-----tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    |||||||||||||||||     ||||||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  5974133 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 5974214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 25448281 - 25448243
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  25448281 ttgttgattcctttgctctctattgttcttccaagacct 25448243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 675915 - 675951
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  675915 gattcctttgctctctattgttcttccaagacctatt 675951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 1900664 - 1900696
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  1900664 ttgttgattcctttgctctcttttgttcttcca 1900696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 2268863 - 2268891
Alignment:
Q  180 tgattcatttgctctcttttgttcttcca 208  Q
    |||||||||||||||||||||||||||||    
T  2268863 tgattcatttgctctcttttgttcttcca 2268891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 20799409 - 20799445
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  20799409 gattcctttgctctctattgttcttccaagacctatt 20799445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 22609729 - 22609693
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  22609729 gattcctttgctctctattgttcttccaagacctatt 22609693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 34255372 - 34255221
Alignment:
Q  67 cttgcttctgacggatttgcttctgatgacgtca-----tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||| | | ||||||||||||||||||     ||||| |||||||| ||||||  |||||| | |||| ||| |||| |||||| ||| || |    
T  34255372 cttgcttctgatgaacttgcttctgatgacgtcattacttcagaggcactttgtcttcaggagcacttcaaactttagacgcagttttcttcagaggc-t 34255274  T
Q  162 ttaggtttctcttcttgttgattcatttgctctct-tttgttcttccaagacc 213  Q
    ||| | ||| ||| ||||||||  || |||||| | |||||||||||||||||    
T  34255273 ttaagcttccctttttgttgatgtatatgctctttatttgttcttccaagacc 34255221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 36134505 - 36134537
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  36134505 ttgttgattcctttgctctcttttgttcttcca 36134537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36210005 - 36209775
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||    
T  36210005 tgaatcttctgatcaactt-cagtttctggtgttatacagcttctgaacagttggcttctgaaggtcttgcttctgatagatttgcttctgatgacgtca 36209907  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| ||| ||||||||||||||||  |||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| || |||||||||||    
T  36209906 tcagatgcattttagcttcagacgcactttcaacttcagaggcagatttcttcagacgcttctaggtttctcttcttgttgattccttagctctcttttg 36209807  T
Q  201 ttcttccaagacctattatgttgatcaacttt 232  Q
    ||||||||||||||||||  ||||||||||||    
T  36209806 ttcttccaagacctattaaattgatcaacttt 36209775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14778339 - 14778119
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||               ||||||||||| |||||||||||    
T  14778339 tgaatcttctgatcaacttgcagtttctgatgttatacagcttctgagcaaatggcttctga---------------cggatttgcttttgatgacgtca 14778255  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||| ||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||||||||||  |||||||| ||||||||||||||    
T  14778254 tcatatgcattttggcttcagacgcactttagacttcagatgttgatttcttcagatgcttctaggtttctcttcacgttgattcctttgctctcttttg 14778155  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    || ||| |||||||||||  ||||||||||||||||    
T  14778154 tttttctaagacctattaaattgatcaactttgtct 14778119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 33378672 - 33378822
Alignment:
Q  86 cttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattc 185  Q
    ||||||||||||||||||||| || |||||||||||  |||||||  |||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||    
T  33378672 cttctgatgacgtcatcagatacattttggcttcaggagcactttcaacttcagaggcagatttctttagatgcttt-aggtttctctttttgttgattc 33378770  T
Q  186 atttgctctcttttgttcttccaagacctatt-atgttgatcaactttgtct 236  Q
     ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  33378771 ctttgctctcttttgttcttccaagacctattaaatttgatcaactttgtct 33378822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 17993576 - 17993489
Alignment:
Q  149 tcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||| |||||||| |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  17993576 tcttcagatgcttctaggtttctcttcacgttgattcctttgctctcttttgttcttccaagacctattaaattgatcaactttgtct 17993489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 19244289 - 19244388
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    |||||||| |||| |||||| ||||||||| ||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||  ||||||||||||    
T  19244289 acttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatgatttctttgctctcttttgttcttccaagacctattaaattgatcaacttt 19244387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 18006798 - 18006700
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttg 233  Q
    ||||||| |||| |||||| ||||||||| ||||| ||||| ||| || ||| |||||||||||||||||||||||||||||||   |||||||||||||    
T  18006798 cttcagacgcagttttcttcagatgcttt-aggttcctcttattgatggttcctttgctctcttttgttcttccaagacctattgaattgatcaactttg 18006700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 16819119 - 16819037
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| |||||| ||||||||| ||||| ||||||||| ||  || |||||||||||||||||||||||||||||||    
T  16819119 cttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatgggtcctttgctctcttttgttcttccaagacctatt 16819037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 18774423 - 18774341
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| |||||| | ||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  18774423 cttcagacgcagttttcttcatatgcttt-aggttactcttcttgatggttcctttgctctcttttgttcttccaagacctatt 18774341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 33378579 - 33378646
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgct 72  Q
    |||||||||| ||||| ||| ||||| || |||||||||||||| ||||||||||||||||| ||||||    
T  33378579 atcttctgatgaactt-cagtttctggtgatatacagcttctgatcaaatggcttctgaaggacttgct 33378646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 17993687 - 17993613
Alignment:
Q  3 aatcttctgatcaacttgcagattctgatgtta-tacagcttctgaacaaatggcttctgaaggtcttgcttctga 77  Q
    ||||| ||||||||||| ||| ||||||||||  || ||||||||||||| | |||||||||||||||||||||||    
T  17993687 aatctcctgatcaactt-cagtttctgatgtttgtatagcttctgaacaattagcttctgaaggtcttgcttctga 17993613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 13575930 - 13575892
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  13575930 ttgttgattcatttgctctctattgttcttccaagacct 13575892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 37435307 - 37435266
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  37435307 ttgttgattcatttgctctcttttgttcttccagaacctatt 37435266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 56034879 - 56034916
Alignment:
Q  171 tcttcttgttgattcatttgctctcttttgttcttcca 208  Q
    |||| |||||||||||||||||||||||||||||||||    
T  56034879 tctttttgttgattcatttgctctcttttgttcttcca 56034916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 17993635 - 17993579
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcagacgca 126  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||| ||||||| |||    
T  17993635 gcttctgaaggtcttgcttctgatgacgtcatcagatgcattttgtcttcagaggca 17993579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 40470406 - 40470324
Alignment:
Q  83 ttgcttctgatgacgtcat-----cagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    |||||||||||||||||||     |||||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  40470406 ttgcttctgatgacgtcatcactccagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 40470324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 22675336 - 22675298
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  22675336 ttgttgattcctttgctctctattgttcttccaagacct 22675298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 25657595 - 25657676
Alignment:
Q  84 tgcttctgatgacgtcat-----cagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||     |||||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  25657595 tgcttctgatgacgtcatcactccagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 25657676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 40454149 - 40454068
Alignment:
Q  84 tgcttctgatgacgtcat-----cagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||     |||||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  40454149 tgcttctgatgacgtcatcactccagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 40454068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 45833721 - 45833759
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  45833721 ttgttgattcgtttgctctcttttgttcttccaaaacct 45833759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 47151879 - 47151795
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctttta 164  Q
    ||||||||||||||||||||     || ||||||  |||||||| ||||||||| ||||||| |||| |||||| |||||||||||    
T  47151879 tgcttctgatgacgtcatcacttcagaggcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctttta 47151795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 3395951 - 3395983
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  3395951 ttgttgattcctttgctctcttttgttcttcca 3395983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 9141188 - 9141220
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  9141188 ttgttgattcctttgctctcttttgttcttcca 9141220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 12601426 - 12601458
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  12601426 ttgttgattcctttgctctcttttgttcttcca 12601458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 14904105 - 14904073
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    ||||| |||||||||||||||||||||||||||    
T  14904105 ttgtttattcatttgctctcttttgttcttcca 14904073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 19620878 - 19620846
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  19620878 ttgttgattcctttgctctcttttgttcttcca 19620846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 29121659 - 29121738
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||| ||||| |||||| ||| | ||||| | ||| ||| |||||||||| |||||||| | |||||||||||||||||    
T  29121659 cttcaggtgcagttttcttcagacg-ttttaagcttccctttttgttgattcctttgctctttattgttcttccaagacct 29121738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 49001695 - 49001659
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  49001695 gattcctttgctctctattgttcttccaagacctatt 49001659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 55651867 - 55651903
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  55651867 gattcctttgctctctattgttcttccaagacctatt 55651903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40228824 - 40229059
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgtt-atacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtc 99  Q
    ||||||| ||||||||||| ||| ||||| |||| ||| ||||||||||||| | |||||||||||||||||||||||  ||||||||||||||||||||    
T  40228824 tgaatctcctgatcaactt-cagtttctggtgtttatatagcttctgaacaattagcttctgaaggtcttgcttctgatagatttgcttctgatgacgtc 40228922  T
Q  100 atcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctctttt 199  Q
    |||||||||| ||||||||||||||||||||  |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  40228923 atcagatgcattttggcttcagacgcactttcaacttcagaggcagatttcttcagatgcttctaggtttctcttcttgttgattcctttgctctctttt 40229022  T
Q  200 gttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||||||||||||||||||  ||||| ||||||||||    
T  40229023 gttcttccaagacctattaaattgattaactttgtct 40229059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20215087 - 20214853
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||    
T  20215087 tgaatcttctgatcaactt-cagtttctgatgatatacagcttctgaacagttggcttctgaaggtcttgcttctgatagatttgcttctgatgacgtca 20214989  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| |||||||||||| |||||||  |||||| | ||||||||||| |||||||| |||||||||||||||| |||||| || |||||||||||    
T  20214988 tcagatgcattttggcttcagaagcactttcaacttcaaaggcagatttcttcagatgcttctaggtttctcttcttgatgattccttagctctcttttg 20214889  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||  || || ||||||||||    
T  20214888 ttcttccaagacctattaaattaattaactttgtct 20214853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40032741 - 40032508
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgtt-atacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtc 99  Q
    ||||||| ||||||||||| ||| ||||| |||| ||| ||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||    
T  40032741 tgaatctcctgatcaactt-cagtttctggtgtttatatagcttctgaacaattggcttctgaagatcttgcttctgatagatttgcttctgatgacgtc 40032643  T
Q  100 atcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctctttt 199  Q
    |||||||| | | ||||||||||||||||||  |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  40032642 atcagatgtattctggcttcagacgcactttcaacttcagaggcagatttcttcagatgcttctaggtttctcttcttgttgattcctttgctctctttt 40032543  T
Q  200 gttcttccaagacctattatgttgatcaactttgt 234  Q
    ||||||||||||| |||||  ||||||||||||||    
T  40032542 gttcttccaagacttattaaattgatcaactttgt 40032508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1915583 - 1915800
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgtt-atacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtc 99  Q
    ||||||| ||||||||||| ||| ||||| |||| ||| ||||| ||||||| | |||||||||||||||||||||||  |||| |||| ||||||||||    
T  1915583 tgaatctcctgatcaactt-cagtttctggtgtttatatagcttatgaacaattagcttctgaaggtcttgcttctgatagattcgcttttgatgacgtc 1915681  T
Q  100 atcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctctttt 199  Q
    |||||||||| |||||||||||| |||                  |||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||    
T  1915682 atcagatgcattttggcttcagaggca------------------gatttcttcagatgcttctagatttctcttcttgttgattcctttgctctctttt 1915763  T
Q  200 gttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||||||||||||||||||  ||||||||||||||||    
T  1915764 gttcttccaagacctattacattgatcaactttgtct 1915800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 13405384 - 13405486
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttg 233  Q
    ||||||| ||||||||||| |||||||| |||||||||||||   ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||    
T  13405384 cttcagaggcagatttcttcagatgcttctaggtttctcttcacattgattcctttgctctcttttgttcttccaagacctattaaattgatcaactttg 13405483  T
Q  234 tct 236  Q
    |||    
T  13405484 tct 13405486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 20167927 - 20167825
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    ||||||||||||| |||||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||| ||||   ||||| ||||||    
T  20167927 acttcagatgcagttttcttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacatattgaattgattaacttt 20167829  T
Q  233 gtct 236  Q
    ||||    
T  20167828 gtct 20167825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 23478669 - 23478758
Alignment:
Q  142 gcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    |||| |||||| ||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||| |||   |||||||||||    
T  23478669 gcagttttcttcagatgcttt-aggcttctctttttgttgattcctttgctctcttttgttcttccaagaccttttaaaatgatcaacttt 23478758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 36096952 - 36096870
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| |||||| | ||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  36096952 cttcagacgcagttttcttcatatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctatt 36096870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 36095469 - 36095413
Alignment:
Q  161 tttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  36095469 tttaggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctatt 36095413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 33933623 - 33933669
Alignment:
Q  168 ttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||    
T  33933623 ttctctttttgttgattcctttgctctctattgttcttccaagacct 33933669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 11207932 - 11207824
Alignment:
Q  19 tgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatcagatgcactttggctt 118  Q
    ||||| ||||| || |||||| |||||||  |||||||||||||  | || ||||||||   | |||||||||||||||||||| | ||||||||| |||    
T  11207932 tgcagtttctggtgatatacaacttctgatgaaatggcttctgatagactagcttctga---aattgcttctgatgacgtcatctggtgcactttgtctt 11207836  T
Q  119 cagacgcacttt 130  Q
    |||  |||||||    
T  11207835 caggagcacttt 11207824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 11994152 - 11994281
Alignment:
Q  83 ttgcttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttga 182  Q
    |||||||||||||| |||||||  || || || ||||||  || ||||| |||||||  |||| |||||| ||||||||| || || | ||| |||||||    
T  11994152 ttgcttctgatgacatcatcaggagcgctgtgtcttcaggagcgcttta-acttcaggagcagttttcttcagatgctttaagcttcc-ctttttgttga 11994249  T
Q  183 ttcatttgctctcttttgttcttccaagacct 214  Q
    ||| ||||||||   |||||||||||||||||    
T  11994250 ttcctttgctcttaattgttcttccaagacct 11994281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13405282 - 13405358
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgtt---atacagcttctgaacaaatggcttctgaaggtcttgcttct 75  Q
    ||||||| ||||||||||| ||| ||||||||||   ||| ||||||||||||| | ||||| |||||||||||||||    
T  13405282 tgaatctcctgatcaactt-cagtttctgatgtttatatatagcttctgaacaattagcttccgaaggtcttgcttct 13405358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 1109491 - 1109572
Alignment:
Q  84 tgcttctgatgacgtca-----tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    |||||||||||||||||     ||||||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  1109491 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 1109572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Original strand, 21910854 - 21910884
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttc 206  Q
    |||||||||||||||||||||||||||||||    
T  21910854 ttgttgattcatttgctctcttttgttcttc 21910884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 3245358 - 3245210
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctttta 164  Q
    |||||||| | | |||||||| ||||||||||||     || |||||||| ||||||| |||||| | |||||||  |||| |||||| ||| ||||| |    
T  3245358 gcttctgatgaacttgcttctaatgacgtcatcactttagaagcactttgtcttcagaagcacttcaaacttcaggagcagttttcttcagacgctttaa 3245259  T
Q  165 ggtttctcttcttgttgattcatttgctctct-tttgttcttccaagacc 213  Q
    | || | ||| ||||||||  ||||||||| | |||||||||||||||||    
T  3245258 gcttcc-ctttttgttgatgtatttgctctttatttgttcttccaagacc 3245210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 11207804 - 11207724
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| |||| |||||| ||| ||||| ||| |||||||  |||||| || || ||| |||||||||||||||||||||    
T  11207804 acttcagaggcagttttcttcagacgcttt-aggcttctctttatgttgaatctttcgctttcttttgttcttccaagacct 11207724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 36084376 - 36084295
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgct 160  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||  ||||||| |||| |||||| |||||||    
T  36084376 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgct 36084295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 13534258 - 13534294
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  13534258 gattcctttgctctctattgttcttccaagacctatt 13534294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 32754395 - 32754431
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  32754395 gattcctttgctctctattgttcttccaagacctatt 32754431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29379741 - 29379975
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||| ||||| ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  29379741 tgaatcttctgataaactt-cagtttctggtgttatacagcttctgaacaattggcttctgaaggtcttgcttctgatagatttgcttctgatgacgtca 29379839  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    |||||| || |||||||||||| |||||||  |||||| | ||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  29379840 tcagatacattttggcttcagatgcactttcaacttcaaaggcagatttcttcagatgcttctaggtttctcttcttgttgattcctttactctcttttg 29379939  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||||||||||||| |||  ||||||||||||||||    
T  29379940 ttcttccaagacctgttaaattgatcaactttgtct 29379975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 17519046 - 17518812
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||| ||||| || |||||||||||||||| | |||||||||||||||||||||||||  |||| ||||||||||||||||    
T  17519046 tgaatcttctgatcaactt-cagtttctggtgatatacagcttctgaacgattggcttctgaaggtcttgcttctgatagattcgcttctgatgacgtca 17518948  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| |||||||||||| |||||||  ||||||||  | |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  17518947 tcagatgcattttggcttcagaagcactttcaacttcagagacggatttcttcagatgcttttaagtttctcttcttgttgattcctttgctctcttttg 17518848  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||  ||||||||| ||||||    
T  17518847 ttcttccaagacctattaaattgatcaacgttgtct 17518812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 23271056 - 23270905
Alignment:
Q  82 tttgcttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttg 181  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  23271056 tttgcttctgatgacgtcattagatgcattttggcttcagacgcactttagacttcagatgcagatttcttcagatgcttctaggtttctcttcttgttg 23270957  T
Q  182 attcatttgctctcttttgttcttccaagacctattatgttgatcaactttg 233  Q
    |||| ||||||||| | |||||||||||||| ||||||||||||||||||||    
T  23270956 attcctttgctctcctatgttcttccaagacttattatgttgatcaactttg 23270905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40003358 - 40003593
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtc 99  Q
    ||||||||||||||||||| ||| ||||| || |||||||||||||| ||||| |||||||||||| || |||| |||   | | |||| ||||||||||    
T  40003358 tgaatcttctgatcaactt-cagtttctggtgatatacagcttctgatcaaattggcttctgaaggactcgcttatgataaactcgcttttgatgacgtc 40003456  T
Q  100 atcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctctttt 199  Q
    |||||||||| ||||| |||||| |||||||  |||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  40003457 atcagatgcattttggtttcagaagcactttcaacttcagaggcagatttcttcagatgcttt-aggtttctcttcttgttgattcctttgctctctttt 40003555  T
Q  200 gttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    |||||||||||||||||| |  ||||||||||||||||    
T  40003556 gttcttccaagacctattaaatttgatcaactttgtct 40003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 18534983 - 18534817
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggttt 169  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||| ||||| | |||||||  |||||||| ||||||||||| |||||||| |||||||    
T  18534983 gcttctgaaggtcttgcttctgatgacgtcatcagatgcattttgtcttcaaaggcactttcaacttcagaggcagatttcttcagatgcttctaggttt 18534884  T
Q  170 ctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||  |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  18534883 ctcttcacgttgattcctttgctctcttttgttcttccaagacctattaaattgatcaactttgtct 18534817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 8032249 - 8032415
Alignment:
Q  70 gcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggttt 169  Q
    |||||||| ||  ||||||||||||||||||||| ||||| |||  ||||||| |||||||  |||||||| ||||||||||| |||||||| |||||||    
T  8032249 gcttctgaaggtcttgcttctgatgacgtcatcatatgcattttctcttcagaggcactttcaacttcagaggcagatttcttcagatgcttctaggttt 8032348  T
Q  170 ctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||  |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  8032349 ctcttcacgttgattcctttgctctcttttgttcttccaagacctattaaattgatcaactttgtct 8032415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 28903764 - 28903867
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt-atgttgatcaactt 231  Q
    |||||||| |||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||||    
T  28903764 acttcagacgcagttttcttcagatgcttt-aggtttctcttcttgttgattcctttgctctcttttgttcttccaagacctattaaatttgatcaactt 28903862  T
Q  232 tgtct 236  Q
    |||||    
T  28903863 tgtct 28903867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 21541271 - 21541351
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  21541271 acttcagaggcagatttcttcagatgcttt-aggcttctctttttgttgattcctttgctctcttttgttcttccaagacct 21541351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 19461468 - 19461567
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    |||||||| |||| |||||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||   | ||||||||||    
T  19461468 acttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctattgaatagatcaacttt 19461566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 19559146 - 19559245
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    |||||||| |||| |||||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||   | ||||||||||    
T  19559146 acttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctattgaatagatcaacttt 19559244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 16189323 - 16189364
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  16189323 ttgttgattcatttgctctcttttgttcttccagaacctatt 16189364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 18120951 - 18120910
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  18120951 ttgttgattcatttgctctcttttgttcttccagaacctatt 18120910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 45567839 - 45567762
Alignment:
Q  34 tatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatcagatgcact 111  Q
    ||||||||||||||  |||| ||||||||  | ||||||||||| | | || ||||||||||||||||||| ||||||    
T  45567839 tatacagcttctgaggaaatagcttctgatagacttgcttctgatgaacttacttctgatgacgtcatcaggtgcact 45567762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 16207579 - 16207611
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||||||||||||||||||||||||||    
T  16207579 ttgttgattcatttgctctcttttgttcttcca 16207611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 20161058 - 20160977
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  20161058 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 20160977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 20196409 - 20196490
Alignment:
Q  84 tgcttctgatgacgtca-----tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    |||||||||||||||||     ||||||||||||  |||||||| ||||||||| ||||||| |||| |||||| ||||||||    
T  20196409 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttag-cttcagacgcagttttcttcagatgctt 20196490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 21541149 - 21541242
Alignment:
Q  25 ttctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatcagatgcactttggcttcag 121  Q
    ||||| || ||||||||||||||  |||| |||| ||||   ||||||||||| | | | |||||||||||||||||||| |||| |||| ||||||    
T  21541149 ttctggtgatatacagcttctgatgaaatagcttatgaa---cttgcttctgatgaactcgcttctgatgacgtcatcaggtgcattttgtcttcag 21541242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 1237960 - 1238031
Alignment:
Q  142 gcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||| |||||| ||||||||| || || | ||| |||||||||| |||||||| | |||||||||||||||||    
T  1237960 gcagttttcttcagatgctttaagcttcc-ctttttgttgattcctttgctctttattgttcttccaagacct 1238031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 3833278 - 3833314
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  3833278 gattcctttgctctctattgttcttccaagacctatt 3833314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 3844058 - 3844094
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  3844058 gattcctttgctctctattgttcttccaagacctatt 3844094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 3844349 - 3844385
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  3844349 gattcctttgctctctattgttcttccaagacctatt 3844385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 17267795 - 17267827
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  17267795 ttgttgattcctttgctctcttttgttcttcca 17267827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 20259362 - 20259326
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  20259362 gattcctttgctctctattgttcttccaagacctatt 20259326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 21045992 - 21045956
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  21045992 gattcctttgctctctattgttcttccaagacctatt 21045956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 22211132 - 22211096
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  22211132 gattcctttgctctctattgttcttccaagacctatt 22211096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 39693859 - 39693891
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    ||||||||||||||||||||||| |||||||||    
T  39693859 ttgttgattcatttgctctctttcgttcttcca 39693891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 117448 - 117682
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||| || |||||||| ||| ||||||||||||  ||||||||||| |||||||||    
T  117448 tgaatcttctgatcaactt-cagtttctggtgttatacagcttctgaaaaattggcttctaaagatcttgcttctgatagatttgcttctaatgacgtca 117546  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||||||||||| |||||||| ||||||||||||||||||||||  || |||||||||||    
T  117547 tcagatgcattttggcttcagacgcactttcaacttcagaggcagatttcttcagatgcttctaggtttctcttcttgttgatttcttagctctcttttg 117646  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||  ||||| ||||||||||    
T  117647 ttcttccaagacctattaaattgatgaactttgtct 117682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 61902 - 62121
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||| ||| || || ||||||||||||||||||||| |||||||||||| ||||||               ||||||||||||||    
T  61902 tgaatcttctgatcaactt-cagtttttggtgttatacagcttctgaacaattggcttctgaagatcttgc---------------ttctgatgacgtca 61985  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||| ||||||| |||||||| ||||||||||||||||||||||| || |||||||||||    
T  61986 tcagatgcattttggcttcagacgcactttcaacttcagaggcatatttcttcagatgcttctaggtttctcttcttgttgattccttagctctcttttg 62085  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    ||||||||||||||||||  ||||||||||||||||    
T  62086 ttcttccaagacctattaaattgatcaactttgtct 62121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 61391 - 61611
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||               ||||||||||||||| |||||||||||    
T  61391 tgaatcttctgatcaacttgcagtttctgatgttatacagcttctgagcaaatggctt---------------ctgacggatttgcttttgatgacgtca 61475  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||| ||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||||||||||  |||||||| ||||||||||||||    
T  61476 tcatatgcattttggcttcagacgcactttagacttcagatgttgatttcttcagatgcttctaggtttctcttcacgttgattcctttgctctcttttg 61575  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    || ||| |||||||||||  ||||||||||||||||    
T  61576 tttttctaagacctattaaattgatcaactttgtct 61611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 481710 - 481491
Alignment:
Q  1 tgaatcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtca 100  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||               ||||||||    
T  481710 tgaatcttctgattaactt-cagtttctgatgttatacagcttctgaacaattggcttctgaaggtcttgcttctga---------------tgacgtca 481627  T
Q  101 tcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttg 200  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  481626 tcagatgcattttggcttcagacgcactttcaacttcagaggcagatttcttcagatgcttctaggtttctcttctcgttgattcctttgctctcttttg 481527  T
Q  201 ttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||||||||||||| |||  ||||| ||||||||||    
T  481526 ttcttccaagaccttttaaattgattaactttgtct 481491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 156563 - 156350
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatc 102  Q
    |||||||||||||||| ||| |||||  | |||||||||||||| ||||| |||||||||||| |||||||||||   | |  ||| |||||||||||||    
T  156563 atcttctgatcaactt-cagtttctggcgatatacagcttctgatcaaattggcttctgaaggacttgcttctgataaactcacttttgatgacgtcatc 156465  T
Q  103 agatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgtt 202  Q
    ||||||| |||||||||||| |||||||  |||||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  156464 agatgcattttggcttcagaagcactttcaacttcagaggcagatttcttcagatgcttt-aggtttctcttcttgttgattcctttgctctcttttgtt 156366  T
Q  203 cttccaagacctatta 218  Q
    ||||||||||||||||    
T  156365 cttccaagacctatta 156350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 117621 - 117657
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  117621 gattcctttgctctctattgttcttccaagacctatt 117657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 5291 - 5504
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaat-ggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatc 102  Q
    |||||||||||||||| ||| ||||| || |||||| ||||||| ||||| |||||||||||| |||||||||||   | |  |||||||||||||||||    
T  5291 atcttctgatcaactt-cagtttctggtgatatacaacttctgatcaaattggcttctgaaggacttgcttctgataaactcacttctgatgacgtcatc 5389  T
Q  103 agatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgtt 202  Q
    ||||||| |||||||||||| |||||||  |||||||| |||||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  5390 agatgcattttggcttcagaagcactttcaacttcagaggcagatatcttcagatgcttt-aggtttctcttcttgttgattcctttgctctcttttgtt 5488  T
Q  203 cttccaagacctatta 218  Q
    ||||||||||||||||    
T  5489 cttccaagacctatta 5504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 6459 - 6217
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctga--------cggat----ttgcttctg 91  Q
    |||||||||| ||||| ||| ||||| || |||||||||||||| ||||||||||||||||| |||||| ||||        | |||    |  ||||||    
T  6459 atcttctgatgaactt-cagtttctggtgatatacagcttctgatcaaatggcttctgaaggacttgctactgaacttgcttctgataatctcacttctg 6361  T
Q  92 atgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgc 191  Q
    |||||||||||||||||| |||||||||||  |||||||  |||||||| ||||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  6360 atgacgtcatcagatgcattttggcttcaggagcactttcaacttcagaagcagatttcttcagatgc-tttaggtttctctt-ttgttgattcctttgc 6263  T
Q  192 tctcttttgttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||    
T  6262 tctcttttgttcttccaagacctattaaatttgatcaactttgtct 6217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 17606 - 17504
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    |||||||| |||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  17606 acttcagacgcagttttcttcagatgcttt-aggtttctcttcttgttgattcctttgctctcttttgttcttccaagacctattaaattgatcaacttt 17508  T
Q  233 gtct 236  Q
    ||||    
T  17507 gtct 17504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1321 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1321
Description:

Target: scaffold1321; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 872 - 629
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctga--------cggat----ttgcttctg 91  Q
    |||||||||| ||||| ||| |||||||| ||||||| |||||| ||||||||||||||||| |||||| ||||        | |||    |  ||||||    
T  872 atcttctgatgaactt-cagtttctgatgatatacagtttctgatcaaatggcttctgaaggacttgctactgaacttgcttctgataatctcacttctg 774  T
Q  92 atgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgc 191  Q
    |||| ||||||||||||| ||| ||||||   ||| |||  |||||||| ||||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  773 atgatgtcatcagatgcattttagcttcaagagcattttcaacttcagaggcagatttcttcagatgc-tttaggtttctctttttgttgattcctttgc 675  T
Q  192 tctcttttgttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    ||||||||||| || ||||||||||| |  ||||||||||||||||    
T  674 tctcttttgtttttacaagacctattaaatttgatcaactttgtct 629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1263 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1263
Description:

Target: scaffold1263; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 1065 - 822
Alignment:
Q  4 atcttctgatcaacttgcagattctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctga--------cggat----ttgcttctg 91  Q
    |||||||||| ||||| ||| |||||||| ||||||| |||||| ||||||||||||||||| |||||| ||||        | |||    |  ||||||    
T  1065 atcttctgatgaactt-cagtttctgatgatatacagtttctgatcaaatggcttctgaaggacttgctactgaacttgcttctgataatctcacttctg 967  T
Q  92 atgacgtcatcagatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgc 191  Q
    |||| ||||||||||||| ||| ||||||   ||| |||  |||||||| ||||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  966 atgatgtcatcagatgcattttagcttcaagagcattttcaacttcagaggcagatttcttcagatgc-tttaggtttctctttttgttgattcctttgc 868  T
Q  192 tctcttttgttcttccaagacctatt-atgttgatcaactttgtct 236  Q
    ||||||||||| || ||||||||||| |  ||||||||||||||||    
T  867 tctcttttgtttttacaagacctattaaatttgatcaactttgtct 822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 9607 - 9709
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaacttt 232  Q
    ||||||||  ||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  9607 acttcagacacagttttcttcagatgcttt-aggtttctcttcttgttgattcctttgctctcttttgttcttccaagacctattaaattgatcaacttt 9705  T
Q  233 gtct 236  Q
    ||||    
T  9706 gtct 9709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 40131 - 40014
Alignment:
Q  116 cttcagacgcactttaga-cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    ||||||| |||||||| | ||||||| |||| |||||| ||||||||| ||||| ||||||||| |||||  ||||||||||||||||||||||||||||    
T  40131 cttcagaagcactttaaaacttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatgatttctttgctctcttttgttcttccaagacct 40033  T
Q  215 attatgttgatcaactttg 233  Q
    ||||  |||||||||||||    
T  40032 attaaattgatcaactttg 40014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 5485 - 5586
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttg 233  Q
    ||||||| |||| |||||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||   ||| |||||||||    
T  5485 cttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctattgaattggtcaactttg 5583  T
Q  234 tct 236  Q
    |||    
T  5584 tct 5586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 1105 - 1187
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| |||||| ||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||    
T  1105 cttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatggttcctttgctctcttttgttcttccaagacctatt 1187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 7418 - 7317
Alignment:
Q  131 agacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaact 230  Q
    |||||||||| |||| |||||| | ||||||| |||||  |||||||| |||||  ||||||||||||||||||||||||||||||||  ||||||||||    
T  7418 agacttcagacgcagttttcttcaaatgcttt-aggttcttcttcttgatgatttctttgctctcttttgttcttccaagacctattaaattgatcaact 7320  T
Q  231 ttg 233  Q
    |||    
T  7319 ttg 7317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 9719 - 9619
Alignment:
Q  116 cttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagaccta 215  Q
    ||||||| |||||| | |||||||| |||| |||||| ||||||||| ||||| ||||||||| ||  || |||||||||||||||||||||||||||||    
T  9719 cttcagaggcacttgaaacttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatgggtcctttgctctcttttgttcttccaagaccta 9621  T
Q  216 tt 217  Q
    ||    
T  9620 tt 9619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 7599 - 7679
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  7599 acttcagaggcagatttcttcagatgcttt-aggcttctctttttgttgattcctttgctctctttttttcttccaagacct 7679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 35522 - 35597
Alignment:
Q  161 tttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctattatgttgatcaactttgtct 236  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |||   |||||||||||||||    
T  35522 tttaggcttctctttttgttgattcctttgctctcttttgttcttccaagaccttttaaaatgatcaactttgtct 35597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0908 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0908
Description:

Target: scaffold0908; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 3691 - 3611
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||| | |||||||||||  |||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  3691 acttcataggcagatttcttcggatgcttt-aggcttctctttttgttgattcctttgctctcttttgttcttccaagacct 3611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 20931 - 21011
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||| ||||||| | ||||||||||| |||||||||||||||||    
T  20931 acttcagaggcagatttcttcagatgcttt-aggcttctctttttgttgaattatttgctctctattgttcttccaagacct 21011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 10966 - 11001
Alignment:
Q  86 cttctgatgacgtcatcagatgcactttggcttcag 121  Q
    |||||||||||||||||||||||| |||||||||||    
T  10966 cttctgatgacgtcatcagatgcattttggcttcag 11001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 20867 - 20902
Alignment:
Q  86 cttctgatgacgtcatcagatgcactttggcttcag 121  Q
    |||||||||||||||||||||||| |||||||||||    
T  20867 cttctgatgacgtcatcagatgcattttggcttcag 20902  T

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Target: scaffold0207; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 11057 - 11110
Alignment:
Q  161 tttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||| ||||||| ||||||| | ||||||||||  |||||||||||||||||    
T  11057 tttaggcttctctttttgttgaattatttgctctcaattgttcttccaagacct 11110  T

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Target: scaffold0752 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 2312 - 2394
Alignment:
Q  134 cttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||| |||||| ||||||||| ||||| ||||||||| || ||| ||||||||||||| |||||||||||||||||    
T  2312 cttcagacgcagttttcttcagatgcttt-aggttactcttcttgatggttcctttgctctcttttattcttccaagacctatt 2394  T

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Target: scaffold0422 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 11983 - 12117
Alignment:
Q  83 ttgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttaga-cttcagatgcagatttcttgagatgcttttaggtttctcttct 176  Q
    |||||||||||||||||||||     || |||||||| ||||||  |||||| | | ||||||| |||| |||||| ||||||||| ||| ||||||| |    
T  11983 ttgcttctgatgacgtcatcacttcagaggcactttgtcttcaggagcacttcaaaacttcagacgcagttttcttcagatgcttt-aggcttctctttt 12081  T
Q  177 tgttgattcatttgctctcttttgttcttccaagac 212  Q
    ||||||||| ||| ||||||||||||||||| ||||    
T  12082 tgttgattcctttcctctcttttgttcttccgagac 12117  T

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Target: scaffold0211 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 15533 - 15447
Alignment:
Q  25 ttctgatgttatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatcagatgcact 111  Q
    ||||| || ||||||||||||||  |||| ||||||||  | ||||||||||| | | |||||||||||||||||||||| ||||||    
T  15533 ttctggtgatatacagcttctgatgaaatagcttctgatagacttgcttctgatgaacttgcttctgatgacgtcatcaggtgcact 15447  T

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Target: scaffold0254 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 22335 - 22404
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttc 203  Q
    |||||||| |||| |||||| ||||||||| ||||| ||||||||| |||||  |||||||||||||||||    
T  22335 acttcagacgcagttttcttcagatgcttt-aggttcctcttcttgatgatttctttgctctcttttgttc 22404  T

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Target: scaffold0485 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 9156 - 9115
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  9156 ttgttgattcatttgctctcttttgttcttccagaacctatt 9115  T

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Target: scaffold0132 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 37863 - 37784
Alignment:
Q  133 acttcagatgcagatttcttgagatgcttttaggtttctcttcttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||| ||||||||||| |||||| |||||| ||||||| |||||||||| |||||| |||| |||||| | |||||||    
T  37863 acttcagaggcagatttcttcagatgc-tttaggcttctctt-ttgttgattcttttgctttcttctgttctacgaagacct 37784  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 164837 - 164760
Alignment:
Q  34 tatacagcttctgaacaaatggcttctgaaggtcttgcttctgacggatttgcttctgatgacgtcatcagatgcact 111  Q
    ||||||||||||||  |||| ||||||||  | |||| |||||| | | |||||||||||||||||||||| ||||||    
T  164837 tatacagcttctgaggaaatagcttctgatagacttggttctgatgaacttgcttctgatgacgtcatcaggtgcact 164760  T

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Target: scaffold0290 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 18400 - 18361
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagaccta 215  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  18400 ttgttgattcctttgctctcttttgttcttccaaaaccta 18361  T

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Target: scaffold0767 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 5013 - 5094
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgctt 161  Q
    ||||||||||||||||||||     || ||||||  |||||||| ||||||||| |||||||||||| |||||| ||||||||    
T  5013 tgcttctgatgacgtcatcacttcagaggcacttcagcttcagaagcactttag-cttcagatgcagttttcttcagatgctt 5094  T

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Target: scaffold0227 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 22992 - 23030
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  22992 ttgttgattcttttgctctctattgttcttccaagacct 23030  T

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Target: scaffold0210 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 1965 - 2003
Alignment:
Q  179 ttgattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  1965 ttgattcctttgctctcttttgttcttccaggacctatt 2003  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 89850 - 89812
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttccaagacct 214  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  89850 ttgttgattcctttgctctctattgttcttccaagacct 89812  T

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Target: scaffold0414 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 7014 - 6877
Alignment:
Q  83 ttgcttctgatgacgtcatcagat-----gcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgcttttaggtttctcttctt 177  Q
    |||||||||||||||||||||  |     |||||||| ||||||  |||||||  |||||||  |||| |||||| ||| ||||||| | ||| ||| ||    
T  7014 ttgcttctgatgacgtcatcacttcaggagcactttgtcttcaggagcacttttaacttcaggagcagttttcttcagacgcttttaagcttcccttttt 6915  T
Q  178 gttgattcatttgctctct-tttgttcttccaagacct 214  Q
    ||||||   |||||||| | ||||||||||||||||||    
T  6914 gttgatgtgtttgctctttatttgttcttccaagacct 6877  T

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Target: scaffold0297 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 17307 - 17352
Alignment:
Q  161 tttaggtttctcttcttgttgattcatttgctctcttttgttcttc 206  Q
    |||||| || |||| |||||||||| ||||||||||||||||||||    
T  17307 tttaggcttatctttttgttgattcctttgctctcttttgttcttc 17352  T

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Target: scaffold0163 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 36616 - 36535
Alignment:
Q  84 tgcttctgatgacgtcatca-----gatgcactttggcttcagacgcactttagacttcagatgcagatttcttgagatgct 160  Q
    ||||||||||||||||||||     |||||||||  |||||||| ||||||||  ||||||| |||| |||||| |||||||    
T  36616 tgcttctgatgacgtcatcacttcagatgcacttcagcttcagaagcactttaagcttcagacgcagttttcttcagatgct 36535  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 103888 - 103917
Alignment:
Q  176 ttgttgattcatttgctctcttttgttctt 205  Q
    ||||||||||||||||||||||||||||||    
T  103888 ttgttgattcatttgctctcttttgttctt 103917  T

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Target: scaffold0861 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 4726 - 4694
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  4726 ttgttgattcctttgctctcttttgttcttcca 4694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 6097 - 6061
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  6097 gattcctttgctctctattgttcttccaagacctatt 6061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 269 - 305
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  269 gattcctttgctctctattgttcttccaagacctatt 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0547 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 1233 - 1261
Alignment:
Q  189 tgctctcttttgttcttccaagacctatt 217  Q
    |||||||||||||||||||||||||||||    
T  1233 tgctctcttttgttcttccaagacctatt 1261  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 36060 - 36096
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  36060 gattcctttgctctctattgttcttccaagacctatt 36096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 49649 - 49681
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  49649 ttgttgattcctttgctctcttttgttcttcca 49681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 25771 - 25739
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  25771 ttgttgattcctttgctctcttttgttcttcca 25739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 8228 - 8260
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  8228 ttgttgattcctttgctctcttttgttcttcca 8260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 60347 - 60379
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  60347 ttgttgattcctttgctctcttttgttcttcca 60379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 39743 - 39775
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  39743 ttgttgattcctttgctctcttttgttcttcca 39775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 137803 - 137835
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  137803 ttgttgattcctttgctctcttttgttcttcca 137835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 59041 - 59005
Alignment:
Q  181 gattcatttgctctcttttgttcttccaagacctatt 217  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  59041 gattcctttgctctctattgttcttccaagacctatt 59005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 30650 - 30618
Alignment:
Q  176 ttgttgattcatttgctctcttttgttcttcca 208  Q
    |||||||||| ||||||||||||||||||||||    
T  30650 ttgttgattcctttgctctcttttgttcttcca 30618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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