View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11268_high_36 (Length: 241)

Name: NF11268_high_36
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11268_high_36
NF11268_high_36
[»] chr2 (3 HSPs)
chr2 (19-241)||(4353487-4353709)
chr2 (22-85)||(1652576-1652638)
chr2 (22-68)||(26009831-26009877)
[»] chr7 (3 HSPs)
chr7 (22-85)||(33084910-33084973)
chr7 (47-83)||(32698893-32698929)
chr7 (45-83)||(16912421-16912459)
[»] chr8 (3 HSPs)
chr8 (22-85)||(16622600-16622662)
chr8 (34-80)||(34453736-34453782)
chr8 (47-92)||(12136562-12136607)
[»] chr4 (2 HSPs)
chr4 (34-92)||(30979876-30979934)
chr4 (22-85)||(38020414-38020477)
[»] chr3 (1 HSPs)
chr3 (22-85)||(50574749-50574814)
[»] chr5 (4 HSPs)
chr5 (22-85)||(10635302-10635365)
chr5 (32-77)||(41087484-41087529)
chr5 (32-77)||(41089830-41089875)
chr5 (33-85)||(39107795-39107846)
[»] chr1 (4 HSPs)
chr1 (46-85)||(8527619-8527658)
chr1 (26-85)||(10799244-10799303)
chr1 (22-76)||(15682171-15682225)
chr1 (22-84)||(36472607-36472668)
[»] scaffold0022 (1 HSPs)
scaffold0022 (46-92)||(139118-139164)
[»] scaffold0160 (1 HSPs)
scaffold0160 (32-85)||(29546-29599)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 4353709 - 4353487
Alignment:
Q  19 ttagaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacattgaccattnnnnnnncacttagaatgcaatgcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  4353709 ttagaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacattgaccattaaaaaaacacttagaatgcaatgcaa 4353610  T
Q  119 gacctgtaatattatgtgttcatcactggttacacaaggaggaaaaaagcagaaaatgaccatagggaagctacttgtaaaaacagcaaatagcaaatag 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4353609 gacctgtaatattatgtgttcatcactggttacacaaggagggaaaaagcagaaaatgaccatagggaagctacttgtaaaaacagcaaatagcaaatag 4353510  T
Q  219 caacaagcacatggaaaagttag 241  Q
    |||||||||||||||||||||||    
T  4353509 caacaagcacatggaaaagttag 4353487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 1652576 - 1652638
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  1652576 gaggtcctaggttcaaacccggatgaaggag-aaaaactaatctaacaactaattaccaacatt 1652638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 26009831 - 26009877
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaac 68  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||    
T  26009831 gaggtcctgggttcaaacccggacgaaggagaaaaaactaatctaac 26009877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 33084973 - 33084910
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||||||| |||| ||||| ||  ||||||||||||||||||||||||| ||||||||||||||    
T  33084973 gaggtcctgggttaaaacctggacgaaggagaaaaaactaatctaacaactaattactaacatt 33084910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 32698929 - 32698893
Alignment:
Q  47 aaggagaaaaaactaatctaacaattaattactaaca 83  Q
    ||||| |||||||||||||||||||||||||||||||    
T  32698929 aaggaaaaaaaactaatctaacaattaattactaaca 32698893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 16912421 - 16912459
Alignment:
Q  45 tgaaggagaaaaaactaatctaacaattaattactaaca 83  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  16912421 tgaaagagaaaaaattaatctaacaattaattactaaca 16912459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 16622662 - 16622600
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||||||| ||||||||| ||| | ||||||||||| |||||||||||| ||||||||||||||    
T  16622662 gaggtcctgggttcaaactcggataaaggagaaaaa-ctaatctaacaactaattactaacatt 16622600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 34453782 - 34453736
Alignment:
Q  34 tcaaacccggctgaaggagaaaaaactaatctaacaattaattacta 80  Q
    ||||||||||   |||||||||||||||||||||||| |||||||||    
T  34453782 tcaaacccggacaaaggagaaaaaactaatctaacaactaattacta 34453736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 12136562 - 12136607
Alignment:
Q  47 aaggagaaaaaactaatctaacaattaattactaacattgaccatt 92  Q
    |||||| ||||||||||| ||||| |||||||||||||| ||||||    
T  12136562 aaggagtaaaaactaatcaaacaactaattactaacattaaccatt 12136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 30979876 - 30979934
Alignment:
Q  34 tcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacattgaccatt 92  Q
    ||||||||||  ||||||||||||||||||||||||| |||| ||||||| | ||||||    
T  30979876 tcaaacccggacgaaggagaaaaaactaatctaacaactaatcactaacacttaccatt 30979934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 38020414 - 38020477
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    ||||||| ||||||||||||||  ||||||| ||| | ||||||||||| | ||||||||||||    
T  38020414 gaggtccaaggttcaaacccggacgaaggagtaaatattaatctaacaactgattactaacatt 38020477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 50574814 - 50574749
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaa--ctaatctaacaattaattactaacatt 85  Q
    |||||||| |||| |||||||  ||||||||||||||  |||||||||||| ||||||||||||||    
T  50574814 gaggtcctgggttgaaacccgaatgaaggagaaaaaaaactaatctaacaactaattactaacatt 50574749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 10635365 - 10635302
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||||||| | |||||||||||  ||||||||||||| | |||||| || ||||||||||||||    
T  10635365 gaggtcctggcttcaaacccgggcgaaggagaaaaaaatgatctaagaactaattactaacatt 10635302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 41087529 - 41087484
Alignment:
Q  32 gttcaaacccggctgaaggagaaaaaactaatctaacaattaatta 77  Q
    |||||||| ||| | || ||||||||||||||||||||||||||||    
T  41087529 gttcaaactcgggtaaacgagaaaaaactaatctaacaattaatta 41087484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 41089875 - 41089830
Alignment:
Q  32 gttcaaacccggctgaaggagaaaaaactaatctaacaattaatta 77  Q
    ||||||||||   |||||||||||||| ||||||||||||||||||    
T  41089875 gttcaaacccaagtgaaggagaaaaaaataatctaacaattaatta 41089830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 39107795 - 39107846
Alignment:
Q  33 ttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||||||||  |||||||||||||| ||| |||||||| ||||||||||||||    
T  39107795 ttcaaacccaactgaaggagaaaaa-ctattctaacaactaattactaacatt 39107846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 8527658 - 8527619
Alignment:
Q  46 gaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  8527658 gaaggataaaaaactaatctaacaattaattacttacatt 8527619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 10799244 - 10799303
Alignment:
Q  26 tcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||| |||||||||| || |||||||| ||| | ||||||||||| ||||||||||||||    
T  10799244 tcctgggttcaaaccaggatgaaggagtaaatattaatctaacaactaattactaacatt 10799303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 15682225 - 15682171
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaatt 76  Q
    |||||||| ||||||||||||| |||||||| ||| | ||||||||||| |||||    
T  15682225 gaggtcctgggttcaaacccggatgaaggagtaaatattaatctaacaactaatt 15682171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 36472668 - 36472607
Alignment:
Q  22 gaggtcctaggttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacat 84  Q
    |||||||| |||||||||||||   |||||| ||||||||||||||||| ||| |||||||||    
T  36472668 gaggtcctgggttcaaacccggacaaaggaggaaaaactaatctaacaactaa-tactaacat 36472607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 139118 - 139164
Alignment:
Q  46 gaaggagaaaaaactaatctaacaattaattactaacattgaccatt 92  Q
    ||||||||||||||||||| ||||| | |||||||||||| ||||||    
T  139118 gaaggagaaaaaactaatccaacaactgattactaacatttaccatt 139164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 29546 - 29599
Alignment:
Q  32 gttcaaacccggctgaaggagaaaaaactaatctaacaattaattactaacatt 85  Q
    |||| |||||||  ||||||||||||||||| ||||||| ||||||||| ||||    
T  29546 gttccaacccggacgaaggagaaaaaactaaactaacaactaattactagcatt 29599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University