View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11268_high_5 (Length: 739)

Name: NF11268_high_5
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11268_high_5
NF11268_high_5
[»] chr6 (17 HSPs)
chr6 (1-724)||(11525592-11526315)
chr6 (1-121)||(7586131-7586251)
chr6 (24-121)||(21128282-21128379)
chr6 (21-121)||(19289275-19289375)
chr6 (21-121)||(11235700-11235800)
chr6 (39-121)||(18498821-18498903)
chr6 (39-121)||(31931624-31931706)
chr6 (39-121)||(18555471-18555553)
chr6 (41-121)||(11206147-11206227)
chr6 (76-121)||(12953080-12953125)
chr6 (41-121)||(25675362-25675443)
chr6 (41-116)||(9933585-9933660)
chr6 (31-117)||(20635779-20635866)
chr6 (24-117)||(17608303-17608397)
chr6 (80-121)||(25518891-25518932)
chr6 (41-121)||(25679438-25679519)
chr6 (41-121)||(25735472-25735553)
[»] chr3 (15 HSPs)
chr3 (1-121)||(51989007-51989127)
chr3 (1-122)||(17022081-17022202)
chr3 (25-121)||(31113874-31113970)
chr3 (165-317)||(32021176-32021328)
chr3 (1-121)||(41045798-41045919)
chr3 (21-121)||(21736361-21736461)
chr3 (31-122)||(10529400-10529490)
chr3 (1-122)||(22151300-22151422)
chr3 (38-121)||(2246618-2246701)
chr3 (1-122)||(13148320-13148442)
chr3 (41-111)||(27173092-27173162)
chr3 (39-110)||(15650972-15651043)
chr3 (387-528)||(32021398-32021539)
chr3 (38-121)||(13199143-13199226)
chr3 (39-110)||(15662607-15662678)
[»] chr1 (19 HSPs)
chr1 (1-121)||(23065004-23065124)
chr1 (3-117)||(19038066-19038180)
chr1 (1-121)||(44201067-44201187)
chr1 (1-121)||(5929758-5929878)
chr1 (25-111)||(28474292-28474378)
chr1 (21-121)||(45070580-45070680)
chr1 (1-121)||(52350590-52350711)
chr1 (1-111)||(22019401-22019512)
chr1 (1-122)||(28380048-28380169)
chr1 (28-122)||(20251827-20251921)
chr1 (1-117)||(22642954-22643071)
chr1 (1-117)||(22655536-22655653)
chr1 (24-116)||(26548184-26548277)
chr1 (39-121)||(46180824-46180906)
chr1 (1-113)||(20799127-20799239)
chr1 (39-121)||(23927113-23927195)
chr1 (76-121)||(22609956-22610001)
chr1 (41-116)||(18310918-18310993)
chr1 (80-121)||(675626-675667)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-121)||(61277-61397)
[»] chr4 (12 HSPs)
chr4 (1-121)||(14778333-14778453)
chr4 (38-111)||(19244058-19244131)
chr4 (1-122)||(36209999-36210120)
chr4 (27-121)||(14710695-14710789)
chr4 (21-111)||(18006971-18007061)
chr4 (1-121)||(17993683-17993804)
chr4 (21-121)||(18774566-18774666)
chr4 (21-121)||(16819262-16819363)
chr4 (21-105)||(8997167-8997251)
chr4 (39-121)||(23509387-23509469)
chr4 (1-117)||(33378465-33378582)
chr4 (80-121)||(55651594-55651635)
[»] chr7 (11 HSPs)
chr7 (1-121)||(8998877-8998997)
chr7 (1-122)||(13174548-13174669)
chr7 (1-121)||(11086988-11087108)
chr7 (165-317)||(30220778-30220930)
chr7 (38-121)||(29590229-29590312)
chr7 (39-111)||(24882402-24882474)
chr7 (38-116)||(13682562-13682640)
chr7 (68-116)||(3476351-3476399)
chr7 (80-121)||(26209571-26209612)
chr7 (387-528)||(30221000-30221141)
chr7 (41-116)||(8933762-8933837)
[»] chr2 (14 HSPs)
chr2 (1-121)||(21025409-21025529)
chr2 (21-111)||(20646510-20646600)
chr2 (21-121)||(19299912-19300012)
chr2 (21-121)||(19312919-19313019)
chr2 (68-121)||(19497940-19497993)
chr2 (21-121)||(19356546-19356647)
chr2 (1-111)||(24814512-24814623)
chr2 (80-121)||(967464-967505)
chr2 (80-121)||(24275252-24275293)
chr2 (1-111)||(24793937-24794048)
chr2 (80-121)||(17969170-17969211)
chr2 (41-121)||(22763881-22763962)
chr2 (41-121)||(22774585-22774666)
chr2 (41-121)||(22779963-22780044)
[»] chr8 (16 HSPs)
chr8 (1-121)||(23271102-23271222)
chr8 (1-121)||(19461211-19461332)
chr8 (1-121)||(19558889-19559010)
chr8 (1-121)||(7018279-7018399)
chr8 (1-122)||(8032080-8032201)
chr8 (1-121)||(22166921-22167041)
chr8 (1-111)||(29379636-29379747)
chr8 (1-113)||(22135756-22135868)
chr8 (1-99)||(17519040-17519139)
chr8 (41-122)||(40003276-40003358)
chr8 (31-111)||(28903516-28903597)
chr8 (80-121)||(3843785-3843826)
chr8 (80-121)||(20259594-20259635)
chr8 (80-121)||(21046224-21046265)
chr8 (80-121)||(22211365-22211406)
chr8 (68-121)||(23370811-23370864)
[»] chr5 (14 HSPs)
chr5 (1-121)||(13405168-13405288)
chr5 (21-121)||(20168068-20168168)
chr5 (1-122)||(40228709-40228830)
chr5 (1-122)||(20215081-20215202)
chr5 (1-122)||(40032735-40032856)
chr5 (21-121)||(13533968-13534068)
chr5 (165-317)||(17628959-17629111)
chr5 (21-121)||(36095654-36095754)
chr5 (21-121)||(36097111-36097211)
chr5 (1-122)||(1915468-1915589)
chr5 (21-109)||(35543130-35543218)
chr5 (21-111)||(13523251-13523341)
chr5 (387-528)||(17628748-17628889)
chr5 (80-121)||(20416964-20417005)
[»] scaffold0017 (2 HSPs)
scaffold0017 (25-109)||(40272-40356)
scaffold0017 (25-109)||(58818-58902)
[»] scaffold0254 (1 HSPs)
scaffold0254 (25-111)||(22106-22192)
[»] scaffold0012 (2 HSPs)
scaffold0012 (31-109)||(7583-7661)
scaffold0012 (80-121)||(127879-127920)
[»] scaffold0280 (1 HSPs)
scaffold0280 (1-122)||(17741-17862)
[»] scaffold0185 (1 HSPs)
scaffold0185 (1-122)||(9351-9472)
[»] scaffold0090 (2 HSPs)
scaffold0090 (21-121)||(879-979)
scaffold0090 (21-121)||(5259-5359)
[»] scaffold0073 (1 HSPs)
scaffold0073 (20-121)||(58534-58635)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-122)||(61787-61908)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-105)||(59215-59299)
[»] scaffold0655 (1 HSPs)
scaffold0655 (1-123)||(5171-5294)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-111)||(481704-481815)
scaffold0002 (1-122)||(156560-156682)
[»] scaffold0774 (1 HSPs)
scaffold0774 (39-121)||(6305-6387)
[»] scaffold0547 (1 HSPs)
scaffold0547 (21-121)||(951-1052)
[»] scaffold0752 (1 HSPs)
scaffold0752 (21-121)||(2053-2153)
[»] scaffold0154 (1 HSPs)
scaffold0154 (43-121)||(35770-35848)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-111)||(6456-6567)
[»] scaffold0481 (1 HSPs)
scaffold0481 (38-111)||(12765-12838)
[»] scaffold1321 (1 HSPs)
scaffold1321 (1-111)||(869-980)
[»] scaffold1263 (1 HSPs)
scaffold1263 (1-111)||(1062-1173)
[»] scaffold0040 (1 HSPs)
scaffold0040 (40-111)||(69840-69911)
[»] scaffold0001 (1 HSPs)
scaffold0001 (76-111)||(28774-28809)
[»] scaffold0422 (1 HSPs)
scaffold0422 (24-117)||(11820-11914)
[»] scaffold0544 (1 HSPs)
scaffold0544 (21-94)||(9826-9899)
[»] scaffold0410 (1 HSPs)
scaffold0410 (80-121)||(15962-16003)
[»] scaffold0163 (1 HSPs)
scaffold0163 (41-121)||(29708-29788)
[»] scaffold0739 (1 HSPs)
scaffold0739 (68-107)||(2241-2280)
[»] scaffold0201 (1 HSPs)
scaffold0201 (41-116)||(7469-7544)


Alignment Details
Target: chr6 (Bit Score: 688; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Original strand, 11525592 - 11526315
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11525592 agattcaacctgaagactctaagagctgtctattggatttaacctcgtctaagagagcgaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 11525691  T
Q  101 tgggtgcttgtacttcattgagtagcatcaaagaagattttagtattttggaagacaattcaacttggcttcttggaaatggtgaaaagattaatttctg 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525692 tgggtgcttgtccttcattgagtagcatcaaagaagattttagtattttggaagacaattcaacttggcttcttggaaatggtgaaaagattaatttctg 11525791  T
Q  201 gaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatctcatctttcctctactgttagtgattacattgttaat 300  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525792 gaatgatagctggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatctcatctttcctctactgttagtgattacattgttaat 11525891  T
Q  301 ggtgagtggagtattccagctgatttaactcatatgtttcaatctcttaggcaactcgttcaacaagctatcattcctttgcggcctaaagaggatgaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11525892 ggtgagtggagtattccagctgatttaactcatatgtttcaatctcttaggcaactcgttcaacaagctatgattcctttgcggcctaaagaggatgaat 11525991  T
Q  401 tgctttggaaacattctgcaaatggattattgaatctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatggaccaaattaatctg 500  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525992 tgctttggaaacattctgcaaatggattattggatctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatggaccaaattaatctg 11526091  T
Q  501 gaacaaagatattcctccatcaaagtctttgatgattaggcgattgatgcaagagaaaatccccggtgataaaaggttaatggaaagaggctgtcagttt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11526092 gaacaaagatattcctccatcaaagtctttgatgattaggcgattgatgcaagagaaaatccccagtgataaaaggttaatggaaagaggctgtcagttt 11526191  T
Q  601 gcttctatgtgcagcctttgtttcaagagttcagaatcttccttacatttattcttttcctgctcttatgctcagaaactttggtcttggatttctgcca 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  11526192 gcttctatgtgcagcctttgtttcaagagttcagaatcttccttacatttatttttttcctgctcctatgctcagaaactttggtcttggatttctgcca 11526291  T
Q  701 ctttaaacatcaacatacagtttg 724  Q
    ||||||||||||||||||||||||    
T  11526292 ctttaaacatcaacatacagtttg 11526315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 7586131 - 7586251
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||||||||||  || || ||||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  7586131 agattcaacctgaagtttcaaatagctgtctagtggatttaacctcgtctaagagagcgaaagactaaaaggaaggtgccaacgttcatttgaaaagcac 7586230  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  7586231 tgggtgcttgtccttcattga 7586251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 21128379 - 21128282
Alignment:
Q  24 agctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    |||||||||||| ||| |||||||||||||| || |||||||| || | |||||| |||||||||||||||||||||||||||||||| |||||||||    
T  21128379 agctgtctattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaacgttcatttgaaaagcactgggtgcttgtccttcattga 21128282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 19289275 - 19289375
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| ||||| ||||||||| ||||||||| ||| ||   ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  19289275 aagagctgtctcttgaagttaacctcgcctaagagagcgaaggatcaaaagggaggtgccaacgttcatttgaaaagcactgggtgcttgtccttcattg 19289374  T
Q  121 a 121  Q
    |    
T  19289375 a 19289375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 11235800 - 11235700
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| || || | ||||||||||||||||| ||| ||   ||||| | || ||||||||||||||||||||||||||||||||| ||||||||    
T  11235800 aagagctgtctcttaaagtaaacctcgtctaagagagcgaaggatcaaaagggaagttccaacgttcatttgaaaagcactgggtgcttgtccttcattg 11235701  T
Q  121 a 121  Q
    |    
T  11235700 a 11235700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 18498903 - 18498821
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||||| ||| ||   ||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||    
T  18498903 ttaacctcgtctaagagagcgaaggatcaaaaggaaagtgacaacgttcatttgaaaagcactgggtgcttatacatcattga 18498821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 31931706 - 31931624
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||||||||| ||   ||||| | |||| ||||||||||||||||||||||||||||||| | |||||||    
T  31931706 ttaacctcgtctaagagagagaaggatcaaaagggaagtgcgaacgttcatttgaaaagcactgggtgcttgtccctcattga 31931624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 18555553 - 18555471
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    |||||||||||||| |||| ||| ||   |||||   |||||||||||||||||||||||||||||||||||||| |||||||    
T  18555553 ttaacctcgtctaaaagagcgaaggatcaaaaggggagtgccaacgttcatttgaaaagcactgggtgcttgtacctcattga 18555471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 11206227 - 11206147
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||||||| ||||||||||| | |||||||    
T  11206227 aacctcgtctaagagagcgaatgatcaaaagggaagtgccaacgttcatttgaaaagcattgggtgcttgtccatcattga 11206147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 12953080 - 12953125
Alignment:
Q  76 gtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||    
T  12953080 gtgccaacgttcatttgaaaagcactaggtgcttgtacctcattga 12953125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 25675443 - 25675362
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaa-gcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||  |||  | | ||||||||||  ||||| ||||||||||| ||||||||||||||| |||||||||    
T  25675443 aacctcgtctaagagaacgaagaattgaaaggaaggtatcaacggtcatttgaaaaagcactgggtgcttgtccttcattga 25675362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 9933585 - 9933660
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttc 116  Q
    ||||||||||||||||  |||  | | ||||| ||||  ||||| |||||||||||||||||||||||||| ||||    
T  9933585 aacctcgtctaagagaacgaagaattaaaagggaggtatcaacggtcatttgaaaagcactgggtgcttgtccttc 9933660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 20635866 - 20635779
Alignment:
Q  31 tattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagcactgggtgcttgtacttca 117  Q
    ||||| ||| |||||| ||||||| || |||||||| || | |||||| ||||| ||||||||||||||| ||| ||||||| |||||    
T  20635866 tattggattcaacctcttctaagatagtgaaagactaaaggaaaggtggcaacggttcatttgaaaagcattggatgcttgtccttca 20635779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 17608303 - 17608397
Alignment:
Q  24 agctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagcactgggtgcttgtacttca 117  Q
    |||||| ||||| ||| |||||| ||||||| || |||||||| || | |||||| ||||| |||||||||||||||  || ||||||| |||||    
T  17608303 agctgtttattggattcaacctcatctaagaaagcgaaagactaaaggaaaggtggcaacgattcatttgaaaagcatgggatgcttgtccttca 17608397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 25518932 - 25518891
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||| ||||||||||||||||||||| |||||||||    
T  25518932 caacggtcatctgaaaagcactgggtgcttgtccttcattga 25518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 25679519 - 25679438
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaa-gcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||  |||  | | ||||| ||||  ||||| ||||||||||| ||||||||||||||| |||||||||    
T  25679519 aacctcgtctaagagaacgaagaattgaaaggtaggtatcaacggtcatttgaaaaagcactgggtgcttgtccttcattga 25679438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 25735472 - 25735553
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaa-gcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||  |||  | | ||||| ||||  ||||| ||||||||||| ||||||||||||||| |||||||||    
T  25735472 aacctcgtctaagagaacgaagaattgaaagggaggtatcaacggtcatttgaaaaagcactgggtgcttgtccttcattga 25735553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 51989007 - 51989127
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  51989007 agattcaacctgaagactctaagagctgtctattggatttaacctcgtctaagagagcgaaagactaaaaggaaggtgccaacgttcatttgaaaagcac 51989106  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  51989107 tgggtgcttgtccttcattga 51989127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 17022202 - 17022081
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||||||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || ||||||||||||||||| |||||||||||     
T  17022202 agattcaacctgaagtttcaaatagctgtctattggattcaacctcgtctaagaaagcgaaagactaaagggaaggtgccaacgttcgtttgaaaagcat 17022103  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    | ||||||||| ||||||||||    
T  17022102 taggtgcttgtccttcattgag 17022081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 31113874 - 31113970
Alignment:
Q  25 gctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| ||||| ||||||||||||||||||||| |||||||| ||||| | ||| ||| |||||||||||||||||| ||||||||| |||||||||    
T  31113874 gctgtttattggatttaacctcgtctaagagagcgaaagactaaaagggaagtgacaatgttcatttgaaaagcactaggtgcttgtccttcattga 31113970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 165 - 317
Target Start/End: Original strand, 32021176 - 32021328
Alignment:
Q  165 ttggcttcttggaaatggtgaaaagattaatttctggaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatct 264  Q
    |||||| ||||| |||||| |||| || | ||||||||||||||| |||||||| || ||||| ||||| ||||| |  || ||| | ||||| |||  |    
T  32021176 ttggctccttggtaatggtcaaaatatcagtttctggaatgatagctggtgtggagcacccctttctcaagccttaagcattcctgatgcaatatcagtt 32021275  T
Q  265 catctttcctctactgttagtgattacattgttaatggtgagtggagtattcc 317  Q
    ||| | || || ||||||||||||||||||||||||||||| |||||||||||    
T  32021276 catttatcttcaactgttagtgattacattgttaatggtgaatggagtattcc 32021328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 41045919 - 41045798
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaagg-aaggtgccaacgttcatttgaaaagca 99  Q
    |||||||||||||||  || || ||||||||| || ||| |||||| ||||||| || |||||||| ||||| ||| |||||||||||  ||||||||||    
T  41045919 agattcaacctgaagtttcaaatagctgtctagtggattcaacctcatctaagaaagcgaaagactaaaagggaagatgccaacgttcgcttgaaaagca 41045820  T
Q  100 ctgggtgcttgtacttcattga 121  Q
    ||||||| |||| |||||||||    
T  41045819 ctgggtgtttgtccttcattga 41045798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 21736461 - 21736361
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||| | || || ||||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||||||||||||||||||| | ||||||    
T  21736461 aagagctgtttctttaagttaacctcgtctaagagagcgaaggatcaaaagggaagtgccaacgttcatttgaaaagcactgggtgcttgtccctcattg 21736362  T
Q  121 a 121  Q
    |    
T  21736361 a 21736361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 10529490 - 10529400
Alignment:
Q  31 tattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattgag 122  Q
    ||||| ||| ||||||||||| || || |||||||| ||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  10529490 tattggattcaacctcgtctaggaaagcgaaagact-aaaggaaagtgccaacgttcgtttgaaaagcattgggtgcttgtccttcattgag 10529400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22151422 - 22151300
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaac-gttcatttgaaaagca 99  Q
    |||||||||||||||  || || |||||| | ||| ||| |||||||||||||| || |||||||| || | |||||| |||| ||||||||||||||||    
T  22151422 agattcaacctgaagtttcaaatagctgttttttggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaacggttcatttgaaaagca 22151323  T
Q  100 ctgggtgcttgtacttcattgag 122  Q
     ||||||||||| ||||| ||||    
T  22151322 ttgggtgcttgtccttcaatgag 22151300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 2246701 - 2246618
Alignment:
Q  38 tttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    |||||||||||||||||||  ||| || | ||||| |||| ||||||||||||||||||||||| |||| |||| |||||||||    
T  2246701 tttaacctcgtctaagagaacgaaggattaaaagggaggtaccaacgttcatttgaaaagcactaggtgtttgtccttcattga 2246618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13148442 - 13148320
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || | |||||| ||||| |||||||||| |||     
T  13148442 agatgcaacctgaagtttcaaatagctgtctattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaacgattcatttgaatagct 13148343  T
Q  100 ctgggtgcttgtacttcattgag 122  Q
     ||||||||||| ||||| ||||    
T  13148342 ttgggtgcttgtccttcaatgag 13148320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 27173162 - 27173092
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    |||||| ||||| |||| ||||||   ||||| ||||||||||| ||||||||||||||||||||||||||    
T  27173162 aacctcatctaaaagagcgaaagatcaaaagggaggtgccaacggtcatttgaaaagcactgggtgcttgt 27173092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 15650972 - 15651043
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttg 110  Q
    |||||||||||||||| || ||| ||   ||||||| ||||||||| || ||||||||||||||||||||||    
T  15650972 ttaacctcgtctaagaaagcgaaggatcaaaaggaaagtgccaacggtcctttgaaaagcactgggtgcttg 15651043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 528
Target Start/End: Original strand, 32021398 - 32021539
Alignment:
Q  387 taaagaggatgaattgctttggaaacattctgcaaatggattattgaatctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatgg 486  Q
    |||||| ||| ||||  ||||||| ||||| || ||||| || ||| | |||||||| |||||||| ||||| ||||| || | ||||||  |||| |||    
T  32021398 taaagatgatcaattaatttggaagcattcagctaatggtttcttggacctcaagcaagcttatgttttcaagagaaataataatgaagatctgaagtgg 32021497  T
Q  487 accaaattaatctggaacaaagatattcctccatcaaagtct 528  Q
     | || ||||| ||||| || ||||||||||| |||||||||    
T  32021498 ccaaagttaatttggaataaggatattcctccctcaaagtct 32021539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 13199143 - 13199226
Alignment:
Q  38 tttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    |||||||||||||||||||  ||   | | ||||| |||| |||||| ||||||||||||||||||||| |||| |||| ||||    
T  13199143 tttaacctcgtctaagagaacgatgaattaaaagggaggtaccaacggtcatttgaaaagcactgggtgtttgtccttctttga 13199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 15662607 - 15662678
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttg 110  Q
    |||||||||||||||| || ||| ||   ||||||| |||| |||| || ||||||||||||||||||||||    
T  15662607 ttaacctcgtctaagaaagcgaaggatcaaaaggaaagtgcgaacggtcgtttgaaaagcactgggtgcttg 15662678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 5e-52; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 23065124 - 23065004
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  23065124 agattcaacctgaagactctaagagctgtctattggatttaacctcgtctaagagagcgaaagactaaaaggaaggtgccaacgttcatttgaaaagcac 23065025  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  23065024 tgggtgcttgtccttcattga 23065004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 19038180 - 19038066
Alignment:
Q  3 attcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactg 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  19038180 attcaacctgaagactctaagagctgtctattggatttaaccttgtctaagagagcgaaagactaaaaggaaggtgccaacgttcatttgaaaagcactg 19038081  T
Q  103 ggtgcttgtacttca 117  Q
    ||||||||| |||||    
T  19038080 ggtgcttgtccttca 19038066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 44201187 - 44201067
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |||||||  | ||||||| |||||||||||||||||||||||    
T  44201187 agattcaacctgaagactctaagagttgtctattggatttaaactcgtctaagagagcgaaagacaaagaggaaggcgccaacgttcatttgaaaagcac 44201088  T
Q  101 tgggtgcttgtacttcattga 121  Q
    || |||||||| |||||||||    
T  44201087 tgagtgcttgtccttcattga 44201067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5929878 - 5929758
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||  ||||||  | ||||||| |||||||||||||||||||||||    
T  5929878 agattcaacctgaagactctaagagttgtctattggatttaaactcgtctaagagagcaaaagacaaagaggaaggcgccaacgttcatttgaaaagcac 5929779  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| ||| |||||    
T  5929778 tgggtgcttgtcctttattga 5929758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 28474378 - 28474292
Alignment:
Q  25 gctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28474378 gctgtttattggatttaacctcgtctaagagagcgaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 28474292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 45070580 - 45070680
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaa-ggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcatt 119  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||| ||| |||||||    
T  45070580 aagagctgtctcttgaagttaacctcgtctaagagagcgaaaga-tcaaatgggaggtgccaacgttcatttgaaaagcactgggtgcctgtccttcatt 45070678  T
Q  120 ga 121  Q
    ||    
T  45070679 ga 45070680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 52350590 - 52350711
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaagg-aaggtgccaacgttcatttgaaaagca 99  Q
    ||||| |||||||||  || || ||||||||| || ||| |||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||||||    
T  52350590 agatttaacctgaagtttcaaatagctgtctagtggattcaacctcatctaagaaagcgaaagactaaaagggaaggtgccaacgttcacttgaaaagca 52350689  T
Q  100 ctgggtgcttgtacttcattga 121  Q
    |||||||||||| |||||||||    
T  52350690 ctgggtgcttgtccttcattga 52350711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22019512 - 22019401
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaac-gttcatttgaaaagca 99  Q
    |||||||||||||||  || || |||||||||||||||| |||||||||||||| || |||||||| || |||||||| | || ||||||||||||||||    
T  22019512 agattcaacctgaagtttcaaatagctgtctattgaattcaacctcgtctaagaaagcgaaagactaaagggaaggtggctactgttcatttgaaaagca 22019413  T
Q  100 ctgggtgcttgt 111  Q
     |||||||||||    
T  22019412 ttgggtgcttgt 22019401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28380169 - 28380048
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| ||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || |||| |||||||||||| |||||||||||     
T  28380169 agattcaatctgaagtttcaaacagctgtctattggattcaacctcgtctaagaaagcgaaagactaaagggaatgtgccaacgttcgtttgaaaagcat 28380070  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    || |||||||| |||| |||||    
T  28380069 tgagtgcttgtccttctttgag 28380048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 20251921 - 20251827
Alignment:
Q  28 gtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattgag 122  Q
    |||||| | ||| |||||||||||||| || |||||||| || ||||||||||||||||| |||||||| || ||||||||||| ||||||||||    
T  20251921 gtctatgggattcaacctcgtctaagaaagcgaaagactaaagggaaggtgccaacgttcgtttgaaaaacattgggtgcttgtccttcattgag 20251827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 22643071 - 22642954
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaac-gttcatttgaaaagca 99  Q
    |||||||||||||||  || || || ||||||||| ||| |||||||||||||| || |||||||| || | |||||| |||| ||||||||||||||||    
T  22643071 agattcaacctgaagtttcaaatagttgtctattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaacggttcatttgaaaagca 22642972  T
Q  100 ctgggtgcttgtacttca 117  Q
     ||||||||||| |||||    
T  22642971 ttgggtgcttgtccttca 22642954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 22655653 - 22655536
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaa-cgttcatttgaaaagca 99  Q
    |||||||||||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || | |||||| |||  ||||||||||||||||    
T  22655653 agattcaacctgaagtttcaaatagctgtctattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaatggttcatttgaaaagca 22655554  T
Q  100 ctgggtgcttgtacttca 117  Q
     ||||||||||| |||||    
T  22655553 ttgggtgcttgtccttca 22655536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 26548184 - 26548277
Alignment:
Q  24 agctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaac-gttcatttgaaaagcactgggtgcttgtacttc 116  Q
    |||||||||||| ||| |||||||||||||| || |||||||| ||||||||||| || | |||||||||||||||| ||||||||||| ||||    
T  26548184 agctgtctattggattcaacctcgtctaagaaagcgaaagactaaaaggaaggtggcagcagttcatttgaaaagcattgggtgcttgtccttc 26548277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 46180824 - 46180906
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||||||||||||||||||| | |||||||    
T  46180824 ttaacctcgtctaagagagcgaaggatcaaaagggaagtgccaacgttcatttgaaaagcactgggtgcttgtccctcattga 46180906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 20799239 - 20799127
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| |||||  ||| ||||||||| | ||||| |||| |||||||| || ||  || ||   ||||| | ||||||||||||||||| |||||||    
T  20799239 agattcaatctgaaatctcaaagagctgtttcttgaagttaatctcgtctacgaaagcaaaggatcaaaagggaagtgccaacgttcatttggaaagcac 20799140  T
Q  101 tgggtgcttgtac 113  Q
    |||||||||||||    
T  20799139 tgggtgcttgtac 20799127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 23927195 - 23927113
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||||| ||| ||   ||||||| ||| |||||||| ||||||||||||| |||| || ||| |||||||    
T  23927195 ttaacctcgtctaagagagcgaaggatcaaaaggaaagtgtcaacgttcgtttgaaaagcacttggtgtttttacctcattga 23927113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 22609956 - 22610001
Alignment:
Q  76 gtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||    
T  22609956 gtgccaacgctcatttgaaaagcactgagtgcttgtacctcattga 22610001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 18310918 - 18310993
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttc 116  Q
    |||||||||||| |||  ||| || | |||||||| |  ||||| |||||||||||||||||||||||||| ||||    
T  18310918 aacctcgtctaaaagaacgaaggattgaaaggaagatatcaacggtcatttgaaaagcactgggtgcttgtccttc 18310993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 675667 - 675626
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||| ||||||||| |||||||||    
T  675667 caacggtcatttgaaaagcactcggtgcttgtccttcattga 675626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 61397 - 61277
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||| ||||||||||||||||||||||| |||||||||    
T  61397 agattcaacctgaagactctaagagctgtctattggatttaacctcgtttaagggagcgaaagactaaaaggaaggtgccaacgttcattagaaaagcac 61298  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  61297 tgggtgcttgtccttcattga 61277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 7e-45; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 14778333 - 14778453
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||| ||||||||||||||||||||||| |||||||||    
T  14778333 agattcaacctgaagactctaagagctgtctattggatttaacctcgtttaagggagcgaaagactaaaaggaaggtgccaacgttcattagaaaagcac 14778432  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  14778433 tgggtgcttgtccttcattga 14778453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 19244131 - 19244058
Alignment:
Q  38 tttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19244131 tttaacctcgtctaagagagcgaaagactcaaaggaaggtgtcaacgttcatttgaaaagcactgggtgcttgt 19244058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 36209999 - 36210120
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||| ||| || || ||||||||| |||||||||||||||||| || |||||||| || ||||||||||||||||  |||||||||||     
T  36209999 agattcaacctgaagtctcaaatagttgtctattggatttaacctcgtctaagaaagcgaaagactaaagggaaggtgccaacgtttgtttgaaaagcat 36210098  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    |||||| |||| ||||||||||    
T  36210099 tgggtgtttgtccttcattgag 36210120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 14710695 - 14710789
Alignment:
Q  27 tgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||| |||||||||||| |||| ||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  14710695 tgtctattggatttaacctcgtttaagggagcgaaagactaaaaggaaggtgccaacgttcattagaaaagcactaggtgcttgtccttcattga 14710789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 18006971 - 18007061
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||| ||||| ||| ||||||||||||||||||||| ||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  18006971 aagagttgtcttttggatttaacctcgtctaagagagcgaaggactaaaagggaggtgccaacgttaatttgaaaagcactgggtgcttgt 18007061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 17993683 - 17993804
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaagg-aaggtgccaacgttcatttgaaaagca 99  Q
    ||||| |||||||||  || || ||||||||| || ||| |||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||||||    
T  17993683 agatttaacctgaagtttcaaatagctgtctagtggattcaacctcatctaagaaagcgaaagactaaaagggaaggtgccaacgttcacttgaaaagca 17993782  T
Q  100 ctgggtgcttgtacttcattga 121  Q
    |||||||||||| |||||||||    
T  17993783 ctgggtgcttgtccttcattga 17993804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 18774566 - 18774666
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| || || |||||||||||||||||||  || ||   ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  18774566 aagagctgtctctttaagttaacctcgtctaagagagcaaaggatcaaaagggaggtgccaacgttcatttgaaaagcactgggtgtttgtccttcattg 18774665  T
Q  121 a 121  Q
    |    
T  18774666 a 18774666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 16819262 - 16819363
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttg-aaaagcactgggtgcttgtacttcatt 119  Q
    ||||| ||||| ||||| |||||||||||||||| || ||||||   ||||| || |||||||||||||||| ||||||||||||||||||| ||| |||    
T  16819262 aagagttgtctcttgaagttaacctcgtctaagaaagcgaaagatcgaaagggagttgccaacgttcatttgaaaaagcactgggtgcttgtcctttatt 16819361  T
Q  120 ga 121  Q
    ||    
T  16819362 ga 16819363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 8997167 - 8997251
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggt 105  Q
    ||||||||||| ||||| ||||||||||| |||| || ||| ||   ||||||| ||||||||||||||||||||||||||||||    
T  8997167 aagagctgtctcttgaagttaacctcgtccaagaaagcgaaggatcaaaaggaaagtgccaacgttcatttgaaaagcactgggt 8997251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 23509469 - 23509387
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||||| ||| ||   ||||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||    
T  23509469 ttaacctcgtctaagagagcgaatgatcaaaaggaaagtgtcaacgttcgtttgaaaagcactgggtgcttttacctcattga 23509387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33378582 - 33378465
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || | |||||| ||||| ||||||||||| |||    
T  33378582 agatgcaacctgaagtttcaaatagctgtctattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaacgattcatttgaaaggca 33378483  T
Q  100 ctgggtgcttgtacttca 117  Q
     ||| ||||||| |||||    
T  33378482 ttggatgcttgtccttca 33378465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 55651635 - 55651594
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  55651635 caacgttcatttgaaaagcactgggtgcttgtccttcattga 55651594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8998877 - 8998997
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||     
T  8998877 agattcaacctgaagtctctaagagctgtctattggatttaacctcgtctaagaaagtgaaagactaaaaggaaggtgccaacgttcatttgaaaagcat 8998976  T
Q  101 tgggtgcttgtacttcattga 121  Q
    |||||||||||  ||||||||    
T  8998977 tgggtgcttgtctttcattga 8998997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 13174548 - 13174669
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||| ||| || |||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||     
T  13174548 agattcaacctgaagtctcaaatagctgtctattggattcaacctcgtctaagaaagagaaagactaaagggaaggtgccaacgttcgtttgaaaagcat 13174647  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    ||||||||| | ||||||||||    
T  13174648 tgggtgcttctccttcattgag 13174669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 11086988 - 11087108
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| ||||||  || || |||||||||||| ||| ||||||||| |||| |  |||||||| |||||||||| ||||||||| |||||||||||     
T  11086988 agattcaatctgaagtttcaaacagctgtctattggattcaacctcgtcaaagaaaacgaaagactaaaaggaaggtaccaacgttcgtttgaaaagcat 11087087  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  11087088 tgggtgcttgtccttcattga 11087108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 165 - 317
Target Start/End: Original strand, 30220778 - 30220930
Alignment:
Q  165 ttggcttcttggaaatggtgaaaagattaatttctggaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatct 264  Q
    |||||| ||||| |||||| |||| || | ||||||||||||||| |||||||| || ||||| ||||| ||||| |  || ||| | ||||| |||  |    
T  30220778 ttggctccttggtaatggtcaaaatatcagtttctggaatgatagctggtgtggagcacccctttctcaagccttaagcattcctgatgcaatatcagtt 30220877  T
Q  265 catctttcctctactgttagtgattacattgttaatggtgagtggagtattcc 317  Q
    ||| | || || ||||||||||||||||||||||||||||| |||||||||||    
T  30220878 catttatcttcaactgttagtgattacattgttaatggtgaatggagtattcc 30220930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 29590312 - 29590229
Alignment:
Q  38 tttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| ||||||||| |||  ||| || | ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  29590312 tttaatctcgtctaaaagaacgaaggattaaaagggaggtaccaacgttcatttgaaaagcactgggtgcttgtccttcattga 29590229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 24882402 - 24882474
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||||||| |||||||||||    
T  24882402 ttaacctcgtctaagagagcgaacgatcaaaagggaagtgccaacgttcatttgaaaagcaatgggtgcttgt 24882474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 13682640 - 13682562
Alignment:
Q  38 tttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttc 116  Q
    |||||||||||||||||||  |||  | | ||||| |||| |||||||||||||||||| |||||||||||||| ||||    
T  13682640 tttaacctcgtctaagagaacgaagaattaaaagggaggtaccaacgttcatttgaaaatcactgggtgcttgtccttc 13682562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 3476351 - 3476399
Alignment:
Q  68 aaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttc 116  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  3476351 aaagggaggtaccaacgttcatttgaaaagcactgggtgcttgtccttc 3476399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 26209571 - 26209612
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  26209571 caacggtcatttgaaaagcactgggtgcttgtccttcattga 26209612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 528
Target Start/End: Original strand, 30221000 - 30221141
Alignment:
Q  387 taaagaggatgaattgctttggaaacattctgcaaatggattattgaatctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatgg 486  Q
    |||||| ||| ||||  ||||||| ||||| || ||||| || ||| | |||||||| |||||||| ||||| ||||| || | ||||||  |||| |||    
T  30221000 taaagatgatcaattaatttggaagcattcagctaatggtttcttggacctcaagcaagcttatgttttcaagagaaataataatgaagatctgaagtgg 30221099  T
Q  487 accaaattaatctggaacaaagatattcctccatcaaagtct 528  Q
     | || ||||| ||||| || ||||||||||| |||||||||    
T  30221100 ccaaagttaatttggaataaggatattcctccctcaaagtct 30221141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 8933837 - 8933762
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttc 116  Q
    ||||||||||||||||  |||  | | ||||| ||||  ||||| |||||||||||||||||||||||||| ||||    
T  8933837 aacctcgtctaagagaacgaagaattaaaagggaggtatcaacggtcatttgaaaagcactgggtgcttgtccttc 8933762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 21025409 - 21025529
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||| |  |||||||||||||||||| ||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||     
T  21025409 agattcaacctgatgtttctaagagctgtctattggattcaacctcgtctaagaaagcgaaagactaaaaggaaggtgccaacgttcatttgaaaagcat 21025508  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  21025509 tgggtgcttgtccttcattga 21025529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 20646510 - 20646600
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||| ||||| ||| ||||||||||||||||||||| ||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  20646510 aagagttgtcttttggatttaacctcgtctaagagagcgaaggactaaaagggaggtgccaacgttaatttgaaaagcactgggtgcttgt 20646600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 19299912 - 19300012
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| ||   ||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  19299912 aagagttgtctcttgaatttaacctcgtctaagagagcgaaggatcaaaagggaggtgtcaacgttcatttgaaaagcactgggtgtttgtccttcattg 19300011  T
Q  121 a 121  Q
    |    
T  19300012 a 19300012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 19312919 - 19313019
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||   ||||| | ||  ||||||||||||||||||||||| |||||||| ||||||||    
T  19312919 aagagctgtctcttgaatttaacctcgtctaagagagcgaaggatcaaaagggatgtttcaacgttcatttgaaaagcactgtgtgcttgtccttcattg 19313018  T
Q  121 a 121  Q
    |    
T  19313019 a 19313019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 19497940 - 19497993
Alignment:
Q  68 aaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19497940 aaagggaggtgccaacgttcatttgaaaagcactgggtgcttgtccttcattga 19497993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 19356647 - 19356546
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttg-aaaagcactgggtgcttgtacttcatt 119  Q
    ||||||||| | || || ||||||||||||||||||| ||| ||   ||||| | ||||||||||||||||| ||||||||||||||||||| | |||||    
T  19356647 aagagctgtttctttaagttaacctcgtctaagagagcgaaggatcaaaagggaagtgccaacgttcatttgaaaaagcactgggtgcttgtccctcatt 19356548  T
Q  120 ga 121  Q
    ||    
T  19356547 ga 19356546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24814512 - 24814623
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||| ||||| ||| |||||| ||||||| || |||||||| || | |||||| ||||| |||||||||||||||    
T  24814512 agatgcaacctgaagtttcaaatagctgtttattggattcaacctcttctaagatagcgaaagactaaaggaaaggtggcaacggttcatttgaaaagca 24814611  T
Q  100 ctgggtgcttgt 111  Q
     |||||||||||    
T  24814612 ttgggtgcttgt 24814623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 967464 - 967505
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  967464 caacggtcatttgaaaagcactgggtgcttgtccttcattga 967505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 24275293 - 24275252
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  24275293 caacggtcatttgaaaagcactgggtgcttgtccttcattga 24275252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24793937 - 24794048
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||| ||||| ||| |||||| | ||||| || |||||||| ||   |||||| ||||| |||||||||||||||    
T  24793937 agatgcaacctgaagtttcaaatagctgtttattggattcaacctcttttaagatagcgaaagactaaagaaaaggtggcaacggttcatttgaaaagca 24794036  T
Q  100 ctgggtgcttgt 111  Q
     |||||||||||    
T  24794037 ttgggtgcttgt 24794048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 17969170 - 17969211
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| ||||||||||||||||||||||| || |||||||||    
T  17969170 caacggtcatttgaaaagcactgggtgctcgtccttcattga 17969211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 22763962 - 22763881
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaa-aagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||  |||  | | ||||| ||||  ||||| ||||||||| ||||||||||||||||| |||||||||    
T  22763962 aacctcgtctaagagaacgaagaattaaaagggaggtatcaacggtcatttgaagaagcactgggtgcttgtccttcattga 22763881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 22774666 - 22774585
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaa-aagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||  |||  | | ||||| ||||  ||||| ||||||||| ||||||||||||||||| |||||||||    
T  22774666 aacctcgtctaagagaacgaagaattaaaagggaggtatcaacggtcatttgaagaagcactgggtgcttgtccttcattga 22774585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 22780044 - 22779963
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaa-aagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||  |||  | | ||||| ||||  ||||| ||||||||| ||||||||||||||||| |||||||||    
T  22780044 aacctcgtctaagagaacgaagaattaaaagggaggtatcaacggtcatttgaagaagcactgggtgcttgtccttcattga 22779963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 23271102 - 23271222
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||||||||||  || ||||||||||| ||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||     
T  23271102 agattcaacctgaagtttcaaagagctgtcttttggatttaacctcgtctaagaaagcgaaagactaaaaggaaggtgccaacgttcatttgaaaaacat 23271201  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  23271202 tgggtgcttgtccttcattga 23271222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 19461332 - 19461211
Alignment:
Q  1 agattcaacctgaagactctaa-gagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagca 99  Q
    |||||||||||||||  || || ||||||||| ||||||||||||||||||||||||| ||| || | ||||| ||||||||||||||||||||||||||    
T  19461332 agattcaacctgaagtttcaaaagagctgtcttttgaatttaacctcgtctaagagagcgaaggattaaaagggaggtgccaacgttcatttgaaaagca 19461233  T
Q  100 ctgggtgcttgtacttcattga 121  Q
    |||||||||||| |||||||||    
T  19461232 ctgggtgcttgtccttcattga 19461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 19559010 - 19558889
Alignment:
Q  1 agattcaacctgaagactctaa-gagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagca 99  Q
    |||||||||||||||  || || ||||||||| ||||||||||||||||||||||||| ||| || | ||||| ||||||||||||||||||||||||||    
T  19559010 agattcaacctgaagtttcaaaagagctgtcttttgaatttaacctcgtctaagagagcgaaggattaaaagggaggtgccaacgttcatttgaaaagca 19558911  T
Q  100 ctgggtgcttgtacttcattga 121  Q
    |||||||||||| |||||||||    
T  19558910 ctgggtgcttgtccttcattga 19558889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 7018279 - 7018399
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||||||||||||||||||| |||||  || |||||| | |||||||||||| ||||||   | ||| |||||||||||||||||||||||||||    
T  7018279 agattcaacctgaagactctaagagttgtctcctggatttaaacccgtctaagagagcgaaagagaaagagggaggtgccaacgttcatttgaaaagcac 7018378  T
Q  101 tgggtgcttgtacttcattga 121  Q
    |||||| |||| |||||||||    
T  7018379 tgggtgtttgtccttcattga 7018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 8032201 - 8032080
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| ||||||  || || || |||||||||  || |||||||||||||| || |||||||| || ||||||||||||||||| |||||||||||     
T  8032201 agattcaatctgaagtttcaaatagttgtctattggtttcaacctcgtctaagaaagcgaaagactaaagggaaggtgccaacgttcgtttgaaaagcat 8032102  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    ||||||||||| |||| |||||    
T  8032101 tgggtgcttgtccttccttgag 8032080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 22166921 - 22167041
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| |||||  ||| ||||||||||| ||||| |||| |||||||| || ||  || ||   ||||||| || ||||||||||||||||||||||    
T  22166921 agattcaatctgaaatctcaaagagctgtctcttgaagttaatctcgtctacgaaagcaaaggatcaaaaggaaagttccaacgttcatttgaaaagcac 22167020  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||||| |||||||    
T  22167021 tgggtgcttgtacctcattga 22167041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 29379747 - 29379636
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaac-gttcatttgaaaagca 99  Q
    |||||||||| ||||  || || |||||||||||||||| |||||||||||||| || |||||||| ||  ||||||| |||| ||||||||||||||||    
T  29379747 agattcaacccgaagtttcaaatagctgtctattgaattcaacctcgtctaagaaagcgaaagactaaagagaaggtggcaacggttcatttgaaaagca 29379648  T
Q  100 ctgggtgcttgt 111  Q
     |||| ||||||    
T  29379647 ttgggcgcttgt 29379636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22135756 - 22135868
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| |||||  ||| ||||||||||| ||||| |||| |||||||| || ||  || ||   ||||||| ||||||| |||||||||||||||||    
T  22135756 agattcaatctgaaatctcaaagagctgtctcttgaagttaatctcgtctacgaaagcaaaggatcaaaaggaaagtgccaaagttcatttgaaaagcac 22135855  T
Q  101 tgggtgcttgtac 113  Q
    |||||||||||||    
T  22135856 tgggtgcttgtac 22135868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 17519040 - 17519139
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaac-gttcatttgaaaagca 99  Q
    |||||||||| ||||  || || |||||||||||| ||| ||||||||| |||| || |||||||| || |||||||| |||| ||||||||||||||||    
T  17519040 agattcaacccgaagtttcaaatagctgtctattggattcaacctcgtccaagaaagcgaaagactaaagggaaggtggcaacggttcatttgaaaagca 17519139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 40003358 - 40003276
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagcactgggtgcttgtacttcattgag 122  Q
    |||||||||||||| |  |||||||| || |||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||    
T  40003358 aacctcgtctaagaaaacgaaagactaaagggaaggtggcaacggttcatttgaaaagcattgggtgcttgtccttcaatgag 40003276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 28903597 - 28903516
Alignment:
Q  31 tattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagcactgggtgcttgt 111  Q
    ||||| ||| |||||||||||||| || |||||||| || | |||||| ||||| ||||||||||||||||||| |||||||    
T  28903597 tattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaacggttcatttgaaaagcactggatgcttgt 28903516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 3843826 - 3843785
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  3843826 caacggtcatttgaaaagcactgggtgcttgtccttcattga 3843785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 20259594 - 20259635
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  20259594 caacggtcatttgaaaagcactgggtgcttgtccttcattga 20259635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 21046224 - 21046265
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  21046224 caacggtcatttgaaaagcactgggtgcttgtccttcattga 21046265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 22211365 - 22211406
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  22211365 caacgttcatttgaaaaacactgggtgcttgtacctcattga 22211406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 23370864 - 23370811
Alignment:
Q  68 aaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||| |||||| |||||||||||||||||||||||||| |||| ||||    
T  23370864 aaagggaggtaccaacggtcatttgaaaagcactgggtgcttgtccttctttga 23370811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 13405288 - 13405168
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||||||||||  || || || ||||||||| ||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||| |||||||||    
T  13405288 agattcaacctgaagtttcaaatagttgtctattggatttaacctcgtctaagggagcgaaatactaaaaggaaggtgccaacgttcattagaaaagcac 13405189  T
Q  101 tgggtgcttgtacttcattga 121  Q
    ||||||||||| |||||||||    
T  13405188 tgggtgcttgtccttcattga 13405168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 20168068 - 20168168
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| ||||| ||||||||||||||||||| ||| ||   ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  20168068 aagagctgtctcttgaagttaacctcgtctaagagagcgaaggatcaaaagggaggtgccaacgttcatttgaaaagcactgggtgcttgtccttcattg 20168167  T
Q  121 a 121  Q
    |    
T  20168168 a 20168168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40228830 - 40228709
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| ||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || ||||||||||||||||| |||||||||||     
T  40228830 agattcaatctgaagtttcaaacagctgtctattggattcaacctcgtctaagaaagcgaaagactaaagggaaggtgccaacgttcgtttgaaaagcat 40228731  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    |||||| |||| ||||||||||    
T  40228730 tgggtgattgtccttcattgag 40228709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20215081 - 20215202
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    ||||||||| ||||| ||| || | || ||||||| ||| |||||||||||||| || |||||||| || ||||||||||||||||  |||||||||||     
T  20215081 agattcaacatgaagtctcaaataactatctattggattcaacctcgtctaagaaagcgaaagactaaagggaaggtgccaacgtttgtttgaaaagcat 20215180  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    ||||||||||| ||||||||||    
T  20215181 tgggtgcttgtccttcattgag 20215202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 40032735 - 40032856
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| ||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || ||||||||||||||||| |||||||||||     
T  40032735 agattcaatctgaagtttcaaacagctgtctattggattcaacctcgtctaagaaagcgaaagactaaagggaaggtgccaacgttcgtttgaaaagcat 40032834  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    | ||||||||| |||| |||||    
T  40032835 ttggtgcttgtccttctttgag 40032856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 13534068 - 13533968
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||| ||||| ||||| ||||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||||||||||||||||||| | ||||||    
T  13534068 aagagttgtctcttgaagttaacctcgtctaagagagcgaatgatcaaaagggaagtgccaacgttcatttgaaaagcactgggtgcttgtccctcattg 13533969  T
Q  121 a 121  Q
    |    
T  13533968 a 13533968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 165 - 317
Target Start/End: Complemental strand, 17629111 - 17628959
Alignment:
Q  165 ttggcttcttggaaatggtgaaaagattaatttctggaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatct 264  Q
    |||||| ||||| |||||| |||| || | ||||||||||||||| |||||||| || ||||| ||||| ||||| |  || ||| | ||||| |||  |    
T  17629111 ttggctccttggtaatggtcaaaatatcagtttctggaatgatagctggtgtggagcacccctttctcaagccttaagcattcctgatgcaatatcagtt 17629012  T
Q  265 catctttcctctactgttagtgattacattgttaatggtgagtggagtattcc 317  Q
    ||| | || || ||||||||||||||||||||||||||||| |||||||||||    
T  17629011 catttatcttcaactgttagtgattacattgttaatggtgaatggagtattcc 17628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 36095654 - 36095754
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||   ||||| || ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  36095654 aagagctgtctcttgaagttaacctcgtctaagagagcgaaagatcgaaagggagttgccaacgttcttttgaaaagcactgcgtgcttgtcctttattg 36095753  T
Q  121 a 121  Q
    |    
T  36095754 a 36095754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 36097111 - 36097211
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||   ||||| || ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  36097111 aagagctgtctcttgaagttaacctcgtctaagagagcgaaagatcgaaagggagttgccaacgttcttttgaaaagcactgcgtgcttgtcctttattg 36097210  T
Q  121 a 121  Q
    |    
T  36097211 a 36097211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1915589 - 1915468
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| ||||||  || || |||||||||||| | | |||||||||||||| || ||||| ||  ||||||||||||||||||| |||||||||||     
T  1915589 agattcaatctgaagtttcaaatagctgtctattggactcaacctcgtctaagaaagcgaaagtctataaggaaggtgccaacgttcgtttgaaaagcat 1915490  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    |||||| |||| |||| |||||    
T  1915489 tgggtgtttgtccttctttgag 1915468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 35543130 - 35543218
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgctt 109  Q
    ||||||||||| ||||| ||||||||||||||||||| ||| ||   ||||| | |||| |||||||||||||||||||||||||||||    
T  35543130 aagagctgtctcttgaagttaacctcgtctaagagagcgaaggatcaaaagggaagtgctaacgttcatttgaaaagcactgggtgctt 35543218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 13523341 - 13523251
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||| ||||| ||||| ||||||| ||||||||||| ||| ||   ||||| | |||||||||||||||||||||| |||||||| ||||    
T  13523341 aagagttgtctcttgaagttaaccttgtctaagagagcgaaggatcaaaagggaagtgccaacgttcatttgaaaagtactgggtgattgt 13523251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 528
Target Start/End: Complemental strand, 17628889 - 17628748
Alignment:
Q  387 taaagaggatgaattgctttggaaacattctgcaaatggattattgaatctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatgg 486  Q
    |||||| ||| ||||  ||||||| ||||| || ||||| || ||| | |||||||| |||||||| ||||| ||||| || | ||||||  |||| |||    
T  17628889 taaagatgatcaattaatttggaagcattcagctaatggtttcttggacctcaagcaagcttatgttttcaagagaaataataatgaagatctgaagtgg 17628790  T
Q  487 accaaattaatctggaacaaagatattcctccatcaaagtct 528  Q
     | || ||||| ||||| || ||||||||||| |||||||||    
T  17628789 ccaaagttaatttggaataaggatattcctccctcaaagtct 17628748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 20416964 - 20417005
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  20416964 caacggtcatttgaaaagcactgggtgcttgtccttcattga 20417005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 40272 - 40356
Alignment:
Q  25 gctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgctt 109  Q
    ||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40272 gctgtttattggatttaacctcatctaagagagtgaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgctt 40356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 58818 - 58902
Alignment:
Q  25 gctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgctt 109  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  58818 gctgtttattggatttaacctcgtctaagagagcgaaagactcaaacgaaggtgccaacgttcatttgaaaagcactgggtgctt 58902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 22192 - 22106
Alignment:
Q  25 gctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||| |||||  |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22192 gctgtttattggttttaacctcgtctaagagagcgaaagactcaaaggaaggtgtcaacgttcatttgaaaagcactgggtgcttgt 22106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 7583 - 7661
Alignment:
Q  31 tattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgctt 109  Q
    ||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583 tattggatttaaccttgtctaagaaagcgaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgctt 7661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 127920 - 127879
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||| ||||||||||||||||||| |||||||||    
T  127920 caacggtcatttaaaaagcactgggtgcttgtccttcattga 127879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17741 - 17862
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||| ||||||||  || || || ||| ||||| ||| |||||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||     
T  17741 agattctacctgaagtttcaaatagttgtttattggattcaacctcatctaagaaagcgaaagactaaaaggaaggtgccaacgttcatttgaaaagcat 17840  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    ||||||||||| ||||||||||    
T  17841 tgggtgcttgtccttcattgag 17862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9472 - 9351
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||| ||||||||  || || |||||| ||||| ||| |||||| ||||||| || |||||||| || |||||||||||||||||||||||||||||     
T  9472 agattctacctgaagtttcaaatagctgtttattggattcaacctcatctaagaaagcgaaagactaaatggaaggtgccaacgttcatttgaaaagcat 9373  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    ||||||||||| ||||||||||    
T  9372 tgggtgcttgtccttcattgag 9351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 979 - 879
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||   ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  979 aagagctgtctcttgaatttaacctcgtctaagagagcgaaggatcaaaagggaggtgtcaacgttcatttgaaaagcactgtgtgcttgtccttcattg 880  T
Q  121 a 121  Q
    |    
T  879 a 879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 5359 - 5259
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||   ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  5359 aagagctgtctcttgaatttaacctcgtctaagagagcgaaggatcaaaagggaggtgtcaacgttcatttgaaaagcactgtgtgcttgtccttcattg 5260  T
Q  121 a 121  Q
    |    
T  5259 a 5259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 58635 - 58534
Alignment:
Q  20 taagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcatt 119  Q
    |||||||||||| || || ||||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||||||||||||||||||| | |||||    
T  58635 taagagctgtctctttaagttaacctcgtctaagagagcgaacgatcaaaagggaagtgccaacgttcatttgaaaagcactgggtgcttgttcctcatt 58536  T
Q  120 ga 121  Q
    ||    
T  58535 ga 58534  T

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Target: scaffold0010 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 61908 - 61787
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcac 100  Q
    |||||||| ||||||  || || |||||||||||| ||| |||||| ||||||| || |||| ||| || ||||||||||||||||  |||||||||||     
T  61908 agattcaatctgaagtttcaaatagctgtctattggattcaacctcatctaagaaagcgaaatactaaagggaaggtgccaacgtttgtttgaaaagcat 61809  T
Q  101 tgggtgcttgtacttcattgag 122  Q
    ||||||||||| ||||||||||    
T  61808 tgggtgcttgtccttcattgag 61787  T

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Target: scaffold0007 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 59215 - 59299
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggt 105  Q
    ||||||||||| |||||  |||||||||||||||||| ||| ||   ||||||| ||||||||||||||||||||||||||||||    
T  59215 aagagctgtctcttgaagataacctcgtctaagagagcgaaggatcaaaaggaaagtgccaacgttcatttgaaaagcactgggt 59299  T

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Target: scaffold0655 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5294 - 5171
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||| ||||||| ||| |||||||||||||| || |||||||| || |||||||| |||||  ||||||||||||||    
T  5294 agatgcaacctgaagtttcaaatagctttctattggattcaacctcgtctaagaaagcgaaagactaaagggaaggtggcaacgactcatttgaaaagca 5195  T
Q  100 ctgggtgcttgtacttcattgagt 123  Q
     ||||||||||| ||||| |||||    
T  5194 ttgggtgcttgtccttcaatgagt 5171  T

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Target: scaffold0002 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 481704 - 481815
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggt-gccaacgttcatttgaaaagca 99  Q
    |||||||||||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || | ||||| || || ||||||||||||||||    
T  481704 agattcaacctgaagtttcaaatagctgtctattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaaaagttcatttgaaaagca 481803  T
Q  100 ctgggtgcttgt 111  Q
     |||||||||||    
T  481804 ttgggtgcttgt 481815  T

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Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 156560 - 156682
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||||||||| ||| |||||||||||||| || |||||||| || | |||||| ||||| |||||||||| |||     
T  156560 agatgcaacctgaagtttcaaatagctgtctattggattcaacctcgtctaagaaagcgaaagactaaaggaaaggtggcaacgattcatttgaatagct 156659  T
Q  100 ctgggtgcttgtacttcattgag 122  Q
     ||||||||||| ||||| ||||    
T  156660 ttgggtgcttgtccttcaatgag 156682  T

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Target: scaffold0774 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 6305 - 6387
Alignment:
Q  39 ttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||||||||||||||||||| | |||||||    
T  6305 ttaacctcgtctaagagagcgaaggatcaaaagggaagtgccaacgttcatttgaaaagcactgggtgcttgtccctcattga 6387  T

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Target: scaffold0547 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 1052 - 951
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttg-aaaagcactgggtgcttgtacttcatt 119  Q
    ||||| ||||| ||||| |||||||||||||||| || ||||||   ||||| || |||||||||||||||| ||||||||||||||||||| ||| |||    
T  1052 aagagttgtctcttgaagttaacctcgtctaagaaagcgaaagatcgaaagggagttgccaacgttcatttgaaaaagcactgggtgcttgtcctttatt 953  T
Q  120 ga 121  Q
    ||    
T  952 ga 951  T

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Target: scaffold0752 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 2153 - 2053
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattg 120  Q
    ||||| |||||  |||| |||| |||||||||||||  ||| ||   ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  2153 aagagttgtctcctgaagttaatctcgtctaagagaacgaaggatcaaaagggaggtgccaacgttcatttgaaaagcactgggtgcctgtccttcattg 2054  T
Q  121 a 121  Q
    |    
T  2053 a 2053  T

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Target: scaffold0154 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 35848 - 35770
Alignment:
Q  43 cctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||  ||| || | ||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  35848 cctcgtctaagagaacgaaggattaaaagggaggtaccaacgttcatttgaaaagcactgggtgcttgtccttctttga 35770  T

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Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6456 - 6567
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||| ||||| ||| |||||| ||||||| || |||||||| || | |||||| ||||| |||||||||||||||    
T  6456 agatgcaacctgaagtttcaaatagctgtttattggattcaacctcttctaagatagcgaaagactaaaggaaaggtggcaacggttcatttgaaaagca 6555  T
Q  100 ctgggtgcttgt 111  Q
     |||||||||||    
T  6556 ttgggtgcttgt 6567  T

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Target: scaffold0481 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 12765 - 12838
Alignment:
Q  38 tttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||| ||||||||||| |  ||| || | ||||| |||| |||||||||||||||||||||||||||||||||    
T  12765 tttaatctcgtctaagaaaacgaaggattaaaagggaggtaccaacgttcatttgaaaagcactgggtgcttgt 12838  T

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Target: scaffold1321 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1321
Description:

Target: scaffold1321; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 869 - 980
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||| ||||| ||| |||||  ||||||| || |||||||| || | |||||| ||||| |||||||||||||||    
T  869 agatgcaacctgaagtttcaaatagctgtttattggattcaaccttttctaagatagcgaaagactaaaggaaaggtggcaacggttcatttgaaaagca 968  T
Q  100 ctgggtgcttgt 111  Q
     |||||||||||    
T  969 ttgggtgcttgt 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1263 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1263
Description:

Target: scaffold1263; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1062 - 1173
Alignment:
Q  1 agattcaacctgaagactctaagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagca 99  Q
    |||| ||||||||||  || || |||||| ||||| ||| |||||  ||||||| || |||||||| || | |||||| ||||| |||||||||||||||    
T  1062 agatgcaacctgaagtttcaaatagctgtttattggattcaaccttttctaagatagcgaaagactaaaggaaaggtggcaacggttcatttgaaaagca 1161  T
Q  100 ctgggtgcttgt 111  Q
     |||||||||||    
T  1162 ttgggtgcttgt 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 69911 - 69840
Alignment:
Q  40 taacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||||||||| |||||  ||| || | ||||| |||| ||||||||||||| |||||||||||||||||||    
T  69911 taacctcgtctgagagaacgaaggattaaaagggaggtaccaacgttcatttaaaaagcactgggtgcttgt 69840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 28774 - 28809
Alignment:
Q  76 gtgccaacgttcatttgaaaagcactgggtgcttgt 111  Q
    ||||||||||||||||||||||||||||||||||||    
T  28774 gtgccaacgttcatttgaaaagcactgggtgcttgt 28809  T

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Target: scaffold0422 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 11914 - 11820
Alignment:
Q  24 agctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacg-ttcatttgaaaagcactgggtgcttgtacttca 117  Q
    |||||| ||||| ||| |||||| ||||||| ||||||||||| || | |||||| ||||| |||||||||||||||  || ||||||| |||||    
T  11914 agctgtttattggattcaacctcatctaagaaagagaaagactaaaggaaaggtggcaacgattcatttgaaaagcatgggatgcttgtccttca 11820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 9826 - 9899
Alignment:
Q  21 aagagctgtctattgaatttaacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaa 94  Q
    ||||||||||| || || ||||||||||||||||||| ||| ||   ||||| | |||||||||||||||||||    
T  9826 aagagctgtctctttaagttaacctcgtctaagagagcgaaggatcaaaagggaagtgccaacgttcatttgaa 9899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0410 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0410
Description:

Target: scaffold0410; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 16003 - 15962
Alignment:
Q  80 caacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  16003 caacggtcatttgaaaagcactgggtgcttgtccttcattga 15962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 29788 - 29708
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttcattga 121  Q
    ||||||||||||||||  ||| ||   ||||||| ||| |||||||| ||||||||||||| ||||||| ||| |||||||    
T  29788 aacctcgtctaagagaccgaaggatcaaaaggaaagtgtcaacgttcgtttgaaaagcacttggtgcttttacctcattga 29708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0739 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0739
Description:

Target: scaffold0739; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 2280 - 2241
Alignment:
Q  68 aaaggaaggtgccaacgttcatttgaaaagcactgggtgc 107  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  2280 aaagggaggtaccaacgttcatttgaaaagcactgggtgc 2241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 7544 - 7469
Alignment:
Q  41 aacctcgtctaagagagagaaagactcaaaggaaggtgccaacgttcatttgaaaagcactgggtgcttgtacttc 116  Q
    ||||| ||||||||||  |||| | | ||||| ||||  ||||| |||||||||||||||||||||||||| ||||    
T  7544 aaccttgtctaagagaacgaaaaattgaaagggaggtatcaacggtcatttgaaaagcactgggtgcttgtccttc 7469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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