View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_high_6 (Length: 733)
Name: NF11268_high_6
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 623 - 714
Target Start/End: Original strand, 6803630 - 6803721
Alignment:
| Q |
623 |
gaatgaattaaacctaaaagttcgatttcacgaaactctataggtttacaagacttctttgtacttttagcttctacacatattggacactt |
714 |
Q |
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| T |
6803630 |
gaatgaattaaacctaaaagttcggtttcacgaaactctataggtttacaagacttctttgtaattttagcttctacacatattgaacactt |
6803721 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 520
Target Start/End: Complemental strand, 43288775 - 43288715
Alignment:
| Q |
460 |
tcatagaatcactattttctcaaacatattcaatatactcttacaatttcaacacacaaaa |
520 |
Q |
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| T |
43288775 |
tcatagaatcactaattttacaaacatattcaacatgctctcacaatttcaacacacaaaa |
43288715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 590
Target Start/End: Original strand, 31399420 - 31399553
Alignment:
| Q |
459 |
atcatagaatcactattttctcaaacatattcaatatactcttacaatttc-aacacacaaaaatcaacagttgt-atgtttaaaagttagagtgtgtac |
556 |
Q |
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| T |
31399420 |
atcatagaatcactgttttc-caaacatatttaatatactctcacaatttctaacacaacaaaaccaacatttgtgaggtttaaaagttagactgtgtat |
31399518 |
T |
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| Q |
557 |
ctgacc-catgtggatgatttcaagggaataatag |
590 |
Q |
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| T |
31399519 |
ctgacctgttgtggattatttcaagggagtaatag |
31399553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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