View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_high_7 (Length: 684)
Name: NF11268_high_7
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 148 - 666
Target Start/End: Complemental strand, 29461791 - 29461270
Alignment:
| Q |
148 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
247 |
Q |
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| T |
29461791 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
29461692 |
T |
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| Q |
248 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacgtgatattgtggtttttgaaaaaccttgaatttactcatgtttgggca |
347 |
Q |
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| T |
29461691 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacatgatattgtggtttttaaaaaaccttgaatttactcatgtttgggca |
29461592 |
T |
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| Q |
348 |
attcaagtcatagcataagnnnnnnnn---gtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
444 |
Q |
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| T |
29461591 |
attcaagtcatagcataaaaaaaaaaaaaagtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
29461492 |
T |
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| Q |
445 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
544 |
Q |
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| T |
29461491 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
29461392 |
T |
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| Q |
545 |
ggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaatatgcttcctcatcactctca |
644 |
Q |
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| T |
29461391 |
ggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaatatgcttcctcatcactctca |
29461292 |
T |
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| Q |
645 |
tccatgttgtatcctttgttgt |
666 |
Q |
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| T |
29461291 |
tccatgttgtatcctttgttgt |
29461270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 413 - 600
Target Start/End: Complemental strand, 29426256 - 29426069
Alignment:
| Q |
413 |
taagaatgaagtaactagttatgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
512 |
Q |
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| T |
29426256 |
taagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
29426157 |
T |
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| Q |
513 |
gcaaaaccatttaacccattaagtaacctcttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaaga |
600 |
Q |
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| T |
29426156 |
gcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgctaaga |
29426069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 29461924 - 29461866
Alignment:
| Q |
15 |
cacagaccaagccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
73 |
Q |
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| T |
29461924 |
cacagaccaaaccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
29461866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
449 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
502 |
Q |
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| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
459 |
gtggattttccagagccagaaggacccataatagcca |
495 |
Q |
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| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 544
Target Start/End: Complemental strand, 36068412 - 36068327
Alignment:
| Q |
459 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
544 |
Q |
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| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttctt |
36068327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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