View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_high_8 (Length: 612)
Name: NF11268_high_8
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 2 - 433
Target Start/End: Original strand, 42662636 - 42663067
Alignment:
| Q |
2 |
atagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaacctcttcacatgttt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42662636 |
atagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaacatcttcacatgttt |
42662735 |
T |
|
| Q |
102 |
tgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataatcctcactcatttg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42662736 |
tgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataatcttcactcatttg |
42662835 |
T |
|
| Q |
202 |
tagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataaggagaaaggctttggct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662836 |
tagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataaggagaaaggctttggct |
42662935 |
T |
|
| Q |
302 |
cctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttcttgatatcagtggaa |
401 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662936 |
cctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttcttgatatcagtggaa |
42663035 |
T |
|
| Q |
402 |
actggtaataatacaagaaattaagggtttaa |
433 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
42663036 |
actggtaataatacaagaaattaagggtttaa |
42663067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 448 - 545
Target Start/End: Original strand, 42663129 - 42663226
Alignment:
| Q |
448 |
catatatatgagatactcttgatattttatgtattaaactgaagtgcaaacacaaaaaccaagcactctcccattgacaatgatagtaatttgaaaaa |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42663129 |
catatatatgagatactcttgatattttatgtattaaactgaagtgcaaacacaaaaaccaagcactctcccattgacaatgatagtaatttgaaaaa |
42663226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 537 - 594
Target Start/End: Original strand, 42663834 - 42663891
Alignment:
| Q |
537 |
tttgaaaaaatgaaagtaattgaatgtaatatttgtgttggtgttggacacgaaatac |
594 |
Q |
| |
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|
| T |
42663834 |
tttgaaaaaatgaaagtaattgaatgtaatatttgtgttggtgttggacacgaaatac |
42663891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 9018921 - 9018887
Alignment:
| Q |
531 |
tagtaatttgaaaaaatgaaagtaattgaatgtaa |
565 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9018921 |
tagtaatttgagaaaatgaaagtaattgaatgtaa |
9018887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 561
Target Start/End: Complemental strand, 10948818 - 10948785
Alignment:
| Q |
528 |
tgatagtaatttgaaaaaatgaaagtaattgaat |
561 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
10948818 |
tgatagtaatttgaaaaaatggaagtaattgaat |
10948785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 20407908 - 20407940
Alignment:
| Q |
534 |
taatttgaaaaaatgaaagtaattgaatgtaat |
566 |
Q |
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|||||||||||||||||||| |||||||||||| |
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|
| T |
20407908 |
taatttgaaaaaatgaaagtgattgaatgtaat |
20407940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 37817271 - 37817303
Alignment:
| Q |
534 |
taatttgaaaaaatgaaagtaattgaatgtaat |
566 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
37817271 |
taattttaaaaaatgaaagtaattgaatgtaat |
37817303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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