View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11268_low_12 (Length: 480)

Name: NF11268_low_12
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11268_low_12
NF11268_low_12
[»] chr4 (3 HSPs)
chr4 (260-463)||(5230488-5230691)
chr4 (16-182)||(5230687-5230855)
chr4 (60-98)||(43061682-43061720)
[»] chr8 (4 HSPs)
chr8 (180-247)||(8056859-8056926)
chr8 (180-247)||(17137272-17137339)
chr8 (196-247)||(443678-443729)
chr8 (30-96)||(11556955-11557021)
[»] chr7 (3 HSPs)
chr7 (180-247)||(6936318-6936385)
chr7 (286-458)||(25338254-25338426)
chr7 (181-247)||(35574989-35575055)
[»] chr1 (2 HSPs)
chr1 (180-247)||(11562462-11562529)
chr1 (181-247)||(15103544-15103610)
[»] chr5 (3 HSPs)
chr5 (181-247)||(18626225-18626291)
chr5 (46-98)||(18542220-18542272)
chr5 (46-98)||(26208015-26208067)
[»] chr3 (3 HSPs)
chr3 (197-247)||(16310987-16311037)
chr3 (197-247)||(18487771-18487821)
chr3 (197-247)||(18491981-18492031)
[»] chr2 (2 HSPs)
chr2 (210-247)||(23059252-23059289)
chr2 (195-247)||(44176721-44176773)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 260 - 463
Target Start/End: Complemental strand, 5230691 - 5230488
Alignment:
Q  260 gagttagagtgtgtgaaaacttactgtggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaag 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230691 gagttagagtgtgtgaaaacttactgtggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaag 5230592  T
Q  360 aaaattgtttatctatgtatggacagcttttatctgagtataaaggctttattgaactgttaaatatccattttccattagcaacattgcattcttctgg 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230591 aaaattgtttatctatgtatggacagcttttatctgagtataaaggctttattgaactgttaaatatccattttccattagcaacattgcattcttctgg 5230492  T
Q  460 atca 463  Q
    ||||    
T  5230491 atca 5230488  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 5230855 - 5230687
Alignment:
Q  16 gacacagccaccagacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacatgtcggatacaag 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5230855 gacacagccaccggacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacgtgtcagatacaag 5230756  T
Q  116 atgcacctttggtccgaactccaaagtattggtgcggc--atagaagatgaataaaatgaacatgagtt 182  Q
    || ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  5230755 atacacctttggtccgaactccaaagtattggtgcgacatatagaagatgaataaaatgaacatgagtt 5230687  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 43061720 - 43061682
Alignment:
Q  60 aatttgagaaaatataactaattgaatgtaaccacatgt 98  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  43061720 aatttgagaaaatataaataattgaatgtaacaacatgt 43061682  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 8056859 - 8056926
Alignment:
Q  180 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  8056859 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 8056926  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 17137272 - 17137339
Alignment:
Q  180 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  17137272 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 17137339  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 443678 - 443729
Alignment:
Q  196 tttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    |||| ||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  443678 tttgcatgcggttcaggcttctcctgtcttttatttgaatttatagctttat 443729  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 11557021 - 11556955
Alignment:
Q  30 acacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacat 96  Q
    |||||||||| |||||| || |||  ||| ||||||||||||| ||| | |||||||||||||||||    
T  11557021 acacaacactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 6936385 - 6936318
Alignment:
Q  180 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  6936385 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgattttctagctttat 6936318  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 458
Target Start/End: Complemental strand, 25338426 - 25338254
Alignment:
Q  286 tggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaagaaaattgtttatctatgtatggacag 385  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||  | || ||||| || | ||||||||||||| | ||||| ||||||||     
T  25338426 tggcaaggtgcaatcttctggctgccactcccaatgttgataatcagaatctgttctaccattttttatacaagaaaattgtctttctatatatggacaa 25338327  T
Q  386 cttttatctgagtataaaggctttattgaactgttaaatatccattttccattagcaacattgcattcttctg 458  Q
     || | || | ||| |  |||||||||||   |||||| | |||||||||||| ||||  |||||||||||||    
T  25338326 gttatgtcagtgtagattggctttattgattggttaaaaacccattttccattggcaatgttgcattcttctg 25338254  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 35575055 - 35574989
Alignment:
Q  181 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    ||||| ||||| || ||||||||  |||| ||| ||||||| ||||||||| |||||||||||||||    
T  35575055 ttttgcttgaactgttttgtatgcagttcgggcctctcctgacttttatttaaatttctagctttat 35574989  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 11562529 - 11562462
Alignment:
Q  180 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  11562529 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgaatttctagcgttat 11562462  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 15103544 - 15103610
Alignment:
Q  181 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    ||||| |||||||| ||| |||| |||||||||||||| || ||||||| |||| ||||||||||||    
T  15103544 ttttgcttgaattgttttatatgcggttcaggcttctcatgacttttatgtgaacttctagctttat 15103610  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 18626291 - 18626225
Alignment:
Q  181 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    ||||| |||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||    
T  18626291 ttttgcttgaattgttttgtatgcggttcaggcttctccggacttttatttaaatttctagctttat 18626225  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 18542272 - 18542220
Alignment:
Q  46 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 98  Q
    |||| |||| ||| |||||||||||||| || ||||||||||||| |||||||    
T  18542272 tcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgt 18542220  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 26208067 - 26208015
Alignment:
Q  46 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 98  Q
    ||||||| ||||| |||||||||||||| || |  ||||||||||||||||||    
T  26208067 tcgatactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgt 26208015  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 16310987 - 16311037
Alignment:
Q  197 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  16310987 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 16311037  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 18487771 - 18487821
Alignment:
Q  197 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18487771 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18487821  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 18491981 - 18492031
Alignment:
Q  197 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18491981 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18492031  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 23059252 - 23059289
Alignment:
Q  210 aggcttctcctggcttttatttgaatttctagctttat 247  Q
    |||||||||||| |||||||||||||||||||||||||    
T  23059252 aggcttctcctgacttttatttgaatttctagctttat 23059289  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 44176721 - 44176773
Alignment:
Q  195 gtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 247  Q
    ||||||||| ||||||||| || ||||||||||  ||||||||||||||||||    
T  44176721 gtttgtatgaggttcaggcatcacctggctttttattgaatttctagctttat 44176773  T

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