View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_13 (Length: 480)
Name: NF11268_low_13
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Complemental strand, 3018170 - 3017713
Alignment:
| Q |
11 |
cataggatgtaattagaatattatctagatgaattgcatatgaaacttaccttttagaataatcaagcaaagaaatttggcaatatctataaaca----t |
106 |
Q |
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| T |
3018170 |
cataggatgtaattagaatattatctagatgaattgcatatgaaacttaccttttagaataatcaagcaaagaaatttggcaatatctataaacaaacat |
3018071 |
T |
|
| Q |
107 |
acatatatgaagtttggtcttaactagaaaatatttttaaagataaacaactaatttggcacaaaaaattcttaaccaaaagcaccgaagtttcccacat |
206 |
Q |
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| T |
3018070 |
acatatatgaagtttggtcttaactagaaaatatttttaaagataaacaactaatttggcacaaaaaattcttaaccaaaagcaccgaaatttcccacat |
3017971 |
T |
|
| Q |
207 |
gattgatgcatcatttgcaccaaagttcactgcatgattattgagtcaagaacatcaaccatagtacccaacatattcacagcatgccgcaaataggtat |
306 |
Q |
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| T |
3017970 |
gattgatgcatcatttgcaccaaagttcactgcatgattattgagtcaagaacatcaaccatagtacccaacatattcacagcatgccgcaaataggtat |
3017871 |
T |
|
| Q |
307 |
tataagctttgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataatgatagtgatcacgacaattata |
406 |
Q |
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| T |
3017870 |
tataagctttgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataatgatagtgatcacgacaattata |
3017771 |
T |
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| Q |
407 |
agcaatccataatgaaatgaaataagtttcagtttcataatcacaatctattaaaaag |
464 |
Q |
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| T |
3017770 |
agcaatccataatgaaatgaaataagtttcagtttcataatcacaatctattaaaaag |
3017713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 46 - 464
Target Start/End: Complemental strand, 3021251 - 3020814
Alignment:
| Q |
46 |
gcatatgaaacttaccttttagaataatcaagcaaagaaatttggcaatatct--ataaacatacatatatgaagtttggtcttaact-------agaaa |
136 |
Q |
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||||||| |||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| || || |
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| T |
3021251 |
gcatatgcaacttaccttttagaatagtcaagaaaagacttttggcaatatctgtataaacataca-atatgaagtttggtcttaactcttaagtagtaa |
3021153 |
T |
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| Q |
137 |
atatttttaaagataaa-caactaatttggcacaaaaaattcttaaccaaaagcaccgaagtttcccacatgattgatgc---atcat-ttgcaccaaag |
231 |
Q |
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| T |
3021152 |
atatttttaaagataaaacaactaatttggcacaaaaaattcttagcca---gcactgaagttcaccacatgattgctattagaacatattgcaccaaag |
3021056 |
T |
|
| Q |
232 |
ttcactgcatgattattgagtcaagaacat---------caaccatagtacccaacatattcacagcatgccgcaaataggtattataagctttgttgca |
322 |
Q |
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|| | |||||| | |||| ||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||| |
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| T |
3021055 |
tttgccacatgatcactgaggcaagaacatgattataatcaaccatagtacccaacatattcacaacataccgcaaacaggtattataagccttgttgca |
3020956 |
T |
|
| Q |
323 |
cacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataatgatagtgatcacgacaattataagcaatccataatgaa |
422 |
Q |
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| T |
3020955 |
cacttttgaagaacactttcccccaactttcgagcatttggtgaaacaacctgaatcataatgatagtgatcacgacaattataagcaatccataatgaa |
3020856 |
T |
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| Q |
423 |
atgaaataagtttcagtttcataatcacaatctattaaaaag |
464 |
Q |
| |
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| T |
3020855 |
atgaaataagtttcagtttcataatcacaatctattaaaaag |
3020814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 424
Target Start/End: Complemental strand, 3033830 - 3033715
Alignment:
| Q |
309 |
taagctttgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataatgatagtgatcacgacaattataag |
408 |
Q |
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||||| |||||||||| ||| ||| || |||| ||||||||||||||||||||| ||||| |||||||||| |||| || || |||||||||||| |
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| T |
3033830 |
taagccttgttgcacaactttcaaggactctttcccccaactttcgagcaattggcaaaacctcctgaatcatgatgacagcagccatgacaattataag |
3033731 |
T |
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| Q |
409 |
caatccataatgaaat |
424 |
Q |
| |
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||| ||||||||||| |
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| T |
3033730 |
aaattcataatgaaat |
3033715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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