View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11268_low_14 (Length: 474)

Name: NF11268_low_14
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11268_low_14
NF11268_low_14
[»] chr5 (5 HSPs)
chr5 (43-474)||(41722878-41723308)
chr5 (40-474)||(41718149-41718582)
chr5 (279-474)||(34352226-34352420)
chr5 (279-474)||(34359934-34360128)
chr5 (279-474)||(29585445-29585640)
[»] chr4 (11 HSPs)
chr4 (211-474)||(48701966-48702228)
chr4 (211-474)||(48697277-48697539)
chr4 (281-474)||(42265883-42266075)
chr4 (281-474)||(42270602-42270794)
chr4 (280-474)||(24520170-24520363)
chr4 (211-474)||(30945621-30945901)
chr4 (211-474)||(30950327-30950607)
chr4 (328-474)||(10427315-10427452)
chr4 (367-471)||(1979253-1979351)
chr4 (411-474)||(48782850-48782911)
chr4 (95-188)||(48781266-48781360)
[»] chr2 (9 HSPs)
chr2 (211-474)||(5198800-5199062)
chr2 (337-470)||(15602912-15603045)
chr2 (352-474)||(28715816-28715934)
chr2 (322-406)||(830205-830291)
chr2 (322-406)||(825549-825635)
chr2 (397-472)||(8004167-8004241)
chr2 (399-474)||(13843939-13844014)
chr2 (397-466)||(13840387-13840456)
chr2 (340-474)||(30397055-30397179)
[»] chr6 (7 HSPs)
chr6 (281-474)||(27874135-27874327)
chr6 (279-474)||(26976276-26976470)
chr6 (280-474)||(1234680-1234873)
chr6 (211-474)||(27878854-27879134)
chr6 (344-474)||(30986552-30986680)
chr6 (335-474)||(30966687-30966824)
chr6 (328-474)||(18967912-18968049)
[»] chr3 (7 HSPs)
chr3 (279-474)||(5818658-5818852)
chr3 (280-474)||(5823420-5823613)
chr3 (211-474)||(2817407-2817658)
chr3 (322-474)||(54545902-54546056)
chr3 (328-466)||(24671173-24671301)
chr3 (424-474)||(35977103-35977153)
chr3 (328-453)||(4579126-4579241)
[»] chr8 (2 HSPs)
chr8 (280-474)||(9439517-9439710)
chr8 (280-474)||(9444237-9444430)
[»] chr7 (4 HSPs)
chr7 (322-470)||(30235038-30235190)
chr7 (328-474)||(16183776-16183913)
chr7 (397-474)||(8140108-8140183)
chr7 (433-472)||(8138606-8138645)
[»] chr1 (2 HSPs)
chr1 (328-474)||(46191266-46191403)
chr1 (433-474)||(30697259-30697300)
[»] scaffold0074 (1 HSPs)
scaffold0074 (328-474)||(27371-27508)


Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 43 - 474
Target Start/End: Original strand, 41722878 - 41723308
Alignment:
Q  43 attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaattta 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41722878 attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaattta 41722977  T
Q  143 ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722978 ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac 41723077  T
Q  243 ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  41723078 ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaat 41723176  T
Q  343 atagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgt 442  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  41723177 atagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgt 41723276  T
Q  443 atttagagagaggtcctgtaatttcttccact 474  Q
    | ||||||||||||||||||||||||||||||    
T  41723277 agttagagagaggtcctgtaatttcttccact 41723308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 40 - 474
Target Start/End: Original strand, 41718149 - 41718582
Alignment:
Q  40 ccaattgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaat 139  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41718149 ccaagtgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaat 41718248  T
Q  140 ttaccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718249 ttaccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttt 41718348  T
Q  240 tacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaa 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  41718349 tacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaa 41718447  T
Q  340 aatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctcct 439  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  41718448 aatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctcct 41718547  T
Q  440 tgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||| ||||||||||||||||||||||||||||||    
T  41718548 tgtagttagagagaggtcctgtaatttcttccact 41718582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 279 - 474
Target Start/End: Original strand, 34352226 - 34352420
Alignment:
Q  279 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  34352226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttct 34352324  T
Q  379 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34352325 cctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 34352420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 279 - 474
Target Start/End: Original strand, 34359934 - 34360128
Alignment:
Q  279 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  34359934 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttct 34360032  T
Q  379 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34360033 cctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 34360128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 279 - 474
Target Start/End: Complemental strand, 29585640 - 29585445
Alignment:
Q  279 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 378  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  29585640 tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 29585541  T
Q  379 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  29585540 cctagtttgtattagttagtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccact 29585445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 48702228 - 48701966
Alignment:
Q  211 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 310  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702228 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 48702129  T
Q  311 taaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctattt 410  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48702128 taaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagttagtattctcctattt 48702030  T
Q  411 ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  48702029 ataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 48701966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 48697539 - 48697277
Alignment:
Q  211 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 310  Q
    ||||||| || |||||| ||||||||| || |  |  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  48697539 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattattctactcatcccaaatcagtaacaacacaagaacaag 48697440  T
Q  311 taaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctattt 410  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48697439 taaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagttagtattctcctattt 48697341  T
Q  411 ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  48697340 ataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 48697277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 281 - 474
Target Start/End: Original strand, 42265883 - 42266075
Alignment:
Q  281 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  42265883 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42265981  T
Q  381 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265982 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 42266075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 281 - 474
Target Start/End: Original strand, 42270602 - 42270794
Alignment:
Q  281 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  42270602 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42270700  T
Q  381 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270701 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 42270794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 280 - 474
Target Start/End: Complemental strand, 24520363 - 24520170
Alignment:
Q  280 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  24520363 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 24520265  T
Q  380 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24520264 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 24520170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 30945901 - 30945621
Alignment:
Q  211 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa- 309  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||     
T  30945901 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaaa 30945802  T
Q  310 gtaaagc---------ttgtt-----tagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt- 394  Q
    ||||  |         |||||     |||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  30945801 gtaacacaacaactacttgttcttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtg 30945702  T
Q  395 -ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30945701 tttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggttctgtaatttcttccact 30945621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 30950607 - 30950327
Alignment:
Q  211 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa- 309  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||     
T  30950607 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccataacaaa 30950508  T
Q  310 gtaaagc---------ttgtt-----tagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt- 394  Q
    ||||  |         |||||     |||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  30950507 gtaacacaacaactacttgttcttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtg 30950408  T
Q  395 -ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  30950407 tttgtattctcctatttataagagagagtggtaattgtactttccttgtatttagagagaggttctgtaatttcttccact 30950327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 10427315 - 10427452
Alignment:
Q  328 agtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 427  Q
    |||||| | |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  10427315 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaa 10427404  T
Q  428 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccact 474  Q
    ||   ||||||||||||||||||||| ||| ||||||| |||||||||    
T  10427405 tttgtctctccttgtatttagagagaagtcttgtaattgtcttccact 10427452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 471
Target Start/End: Original strand, 1979253 - 1979351
Alignment:
Q  367 tgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaattt 466  Q
    ||||||||||||||| ||| ||| ||||    |||||||| |||||||||||||||||||| | ||| ||||||| ||||  ||||||||| ||||||||    
T  1979253 tgtgaggtttctcctggttagtgctagt----attctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaattt 1979346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 48782850 - 48782911
Alignment:
Q  411 ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||||||||||||  | |||||||||||||||||| | ||||||||||||||    
T  48782850 ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccact 48782911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
Q  95 ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc 188  Q
    ||||||||||||||||| |  |||||||| |||||||  ||||| ||||| |||| | ||||| |||||  | ||| |||||||||||||||||||    
T  48781266 ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc 48781360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 5199062 - 5198800
Alignment:
Q  211 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 310  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199062 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 5198963  T
Q  311 taaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctattt 410  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5198962 taaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagttagtattctcctattt 5198864  T
Q  411 ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  5198863 ataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 5198800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 337 - 470
Target Start/End: Original strand, 15602912 - 15603045
Alignment:
Q  337 aaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactct 436  Q
    ||||||||||| ||||||||||| || | || ||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||| |||||||||||| ||    
T  15602912 aaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagttagtattctcctatttacaagatagaatggtaattgtacact 15603011  T
Q  437 ccttgtatttagagagaggtcctgtaatttcttc 470  Q
    || || ||||||||||||||| ||||||||||||    
T  15603012 ccatgcatttagagagaggtcttgtaatttcttc 15603045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 474
Target Start/End: Original strand, 28715816 - 28715934
Alignment:
Q  352 aaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagaga 451  Q
    |||| ||||||||| ||| ||||||||||||| | ||||||||    ||||||||||||||| || |  ||||||||||||||||||||| |||||||||    
T  28715816 aaaaatagtttctcttgtaaggtttctcctaggtagtgttagt----attctcctatttataggaaacggtggtaattgtactctccttgcatttagaga 28715911  T
Q  452 gaggtcctgtaatttcttccact 474  Q
    || ||||||||||||||||||||    
T  28715912 gatgtcctgtaatttcttccact 28715934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 322 - 406
Target Start/End: Original strand, 830205 - 830291
Alignment:
Q  322 tagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct 406  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||    
T  830205 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct 830291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 406
Target Start/End: Original strand, 825549 - 825635
Alignment:
Q  322 tagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct 406  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||  ||||||||||||||    
T  825549 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcctaggtagtgttagtgtttgtattctcct 825635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 8004167 - 8004241
Alignment:
Q  397 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttcca 472  Q
    |||||||||||||||||||||||||| ||||||||||||| |||  ||||| ||||||||  | ||||||||||||    
T  8004167 gtattctcctatttataagagagagt-gtaattgtactcttcttacatttaaagagaggttttataatttcttcca 8004241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 13844014 - 13843939
Alignment:
Q  399 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||| ||| | |||||||||||| || ||| |||||||||| | || |||||||||||||||||||||    
T  13844014 attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccact 13843939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 466
Target Start/End: Complemental strand, 13840456 - 13840387
Alignment:
Q  397 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaattt 466  Q
    |||||||  ||||| ||||||||| | ||||||||||||||||| |||||||||||||||  ||||||||    
T  13840456 gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt 13840387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 474
Target Start/End: Complemental strand, 30397179 - 30397055
Alignment:
Q  340 aatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctcct 439  Q
    ||||||||||| |||  |||||||||||||||| |||||||||||        |||  |||||||||||||  || | |||| |||||||   |||||||    
T  30397179 aatatagagaggaaatatagtttctcctgtgagatttctcctagt--------gttaatattctcctattt-caacatagag-ggtaatttgtctctcct 30397090  T
Q  440 tgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||| |||| ||||||| ||||||||||||||||    
T  30397089 tgtatatagaaagaggtcttgtaatttcttccact 30397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 5e-91; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 281 - 474
Target Start/End: Complemental strand, 27874327 - 27874135
Alignment:
Q  281 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  27874327 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 27874229  T
Q  381 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874228 tagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 27874135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 279 - 474
Target Start/End: Complemental strand, 26976470 - 26976276
Alignment:
Q  279 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  26976470 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 26976372  T
Q  379 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26976371 cctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 26976276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 280 - 474
Target Start/End: Original strand, 1234680 - 1234873
Alignment:
Q  280 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  1234680 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 1234778  T
Q  380 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  1234779 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 1234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 27879134 - 27878854
Alignment:
Q  211 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa- 309  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||     
T  27879134 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaaa 27879035  T
Q  310 gtaaagc---------ttgtt-----tagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt- 394  Q
    ||||  |         |||||     |||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  27879034 gtaacacaacaactacttgttcttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtg 27878935  T
Q  395 -ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878934 tttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 27878854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 344 - 474
Target Start/End: Original strand, 30986552 - 30986680
Alignment:
Q  344 tagagagaaa-aattagtttctcctg-tgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttg 441  Q
    |||||||||| || |||||||||||  ||||||||||||||| | |||| |||    ||||| ||||||| |||||||||||||||||||||||||||||    
T  30986552 tagagagaaagaaatagtttctcctcatgaggtttctcctaggtagtgtcagt----attcttctatttacaagagagagtggtaattgtactctccttg 30986647  T
Q  442 tatttagagagaggtcctgtaatttcttccact 474  Q
     |||||||||||||||||| |||||||||||||    
T  30986648 catttagagagaggtcctgcaatttcttccact 30986680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 335 - 474
Target Start/End: Original strand, 30966687 - 30966824
Alignment:
Q  335 gaaaaaatatagagagaaa-aattagtttctcct-gtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgta 432  Q
    ||||||||||||||||||| || |||||||| || |||||||||||||||| | |  | |||    ||||| ||||||| ||||||||||||||||||||    
T  30966687 gaaaaaatatagagagaaagaaatagtttctacttgtgaggtttctcctaggtagcctcagt----attcttctatttacaagagagagtggtaattgta 30966782  T
Q  433 ctctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||| |||||||||||||| ||| |||||||||||||    
T  30966783 ctctccttgcatttagagagaggttctgcaatttcttccact 30966824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 18967912 - 18968049
Alignment:
Q  328 agtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 427  Q
    |||||| | ||||||||| |||| |||  ||||||||| ||||||||||||||||||        ||| ||||||||||||||  | ||||||| | |||    
T  18967912 agtgagaggaaaaatataaagaggaaatatagtttctcttgtgaggtttctcctagt--------gttagtattctcctattt-catgagagag-gctaa 18968001  T
Q  428 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccact 474  Q
    ||   ||||||||||||||||||||| ||| ||||||| |||||||||    
T  18968002 tttgtctctccttgtatttagagagaagtcttgtaattgtcttccact 18968049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 279 - 474
Target Start/End: Complemental strand, 5818852 - 5818658
Alignment:
Q  279 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttct 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  5818852 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 5818754  T
Q  379 cctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5818753 cctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 5818658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 280 - 474
Target Start/End: Complemental strand, 5823613 - 5823420
Alignment:
Q  280 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  5823613 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 5823515  T
Q  380 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5823514 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 5823420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 211 - 474
Target Start/End: Complemental strand, 2817658 - 2817407
Alignment:
Q  211 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 310  Q
    ||||||| || |||||| ||||||||| || |  |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817658 ataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 2817559  T
Q  311 taaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctattt 410  Q
    |||| ||||||||| ||| |||| |||||||||||||||| |||| |||||||              ||||||||||| |||||| ||||||||||||||    
T  2817558 taaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttc--------------tcctagtttgtattagttagtattctcctattt 2817473  T
Q  411 ata--agagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||  |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||    
T  2817472 ataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccact 2817407  T

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Target: chr3; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 322 - 474
Target Start/End: Original strand, 54545902 - 54546056
Alignment:
Q  322 tagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 419  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  54545902 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 54546001  T
Q  420 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  54546002 agtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccact 54546056  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 466
Target Start/End: Complemental strand, 24671301 - 24671173
Alignment:
Q  328 agtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 427  Q
    |||||| | |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  24671301 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaa 24671212  T
Q  428 ttgtactctccttgtatttagagagaggtcctgtaattt 466  Q
    ||   ||||||||||||||||||||| ||| ||||||||    
T  24671211 tttgtctctccttgtatttagagagaagtcttgtaattt 24671173  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 35977103 - 35977153
Alignment:
Q  424 gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||| ||||||||||||||||||||| ||| |||||||| |||||||    
T  35977103 gtaattgttctctccttgtatttagagagaagtcttgtaattttttccact 35977153  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 453
Target Start/End: Original strand, 4579126 - 4579241
Alignment:
Q  328 agtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 427  Q
    |||||| | |||||||||||||| |||  ||||||||||||||||||||||| |||        |||| ||||||||||||||  | ||||||| |||||    
T  4579126 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcatag--------agttagtattctcctattt-cacgagagag-ggtaa 4579215  T
Q  428 ttgtactctccttgtatttagagaga 453  Q
    ||   |||||||||||||||||||||    
T  4579216 tttgtctctccttgtatttagagaga 4579241  T

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Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 280 - 474
Target Start/End: Complemental strand, 9439710 - 9439517
Alignment:
Q  280 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  9439710 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 9439612  T
Q  380 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9439611 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 9439517  T

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Target: chr8; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 280 - 474
Target Start/End: Complemental strand, 9444430 - 9444237
Alignment:
Q  280 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  9444430 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 9444332  T
Q  380 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9444331 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 9444237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 322 - 470
Target Start/End: Original strand, 30235038 - 30235190
Alignment:
Q  322 tagagtagtgagggaaaaaatatagagagaaaaattagtttctcctg-tgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagaga 418  Q
    |||||||||||| | |||||||||||||||||||||||||||||||  ||||||||||| ||  | ||||||||  ||||||||||||||||||||||||    
T  30235038 tagagtagtgagaggaaaaatatagagagaaaaattagtttctccttatgaggtttctcttacgtagtgttagtgtttgtattctcctatttataagaga 30235137  T
Q  419 gagtggtaattgtactctccttgtattta-gagagaggtcctgtaatttcttc 470  Q
    |||||||||||||||||||||| ||  || |||||||||||||||||||||||    
T  30235138 gagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttc 30235190  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 474
Target Start/End: Complemental strand, 16183913 - 16183776
Alignment:
Q  328 agtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 427  Q
    |||||| | |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  16183913 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaa 16183824  T
Q  428 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccact 474  Q
    ||   ||||||||||||||||||||||||| ||||||| |||||||||    
T  16183823 tttgtctctccttgtatttagagagaggtcttgtaattgtcttccact 16183776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 8140183 - 8140108
Alignment:
Q  397 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||  ||||||||| |||||||   ||||||||||||| ||||||||||| | ||||||||||||||    
T  8140183 gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccact 8140108  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 8138645 - 8138606
Alignment:
Q  433 ctctccttgtatttagagagaggtcctgtaatttcttcca 472  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  8138645 ctctccttgtatttagagggaggtcttgtaatttcttcca 8138606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 46191266 - 46191403
Alignment:
Q  328 agtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 427  Q
    |||||| | |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  46191266 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaa 46191355  T
Q  428 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccact 474  Q
    ||   |||||||| |||||||||||| ||| ||||||| |||||||||    
T  46191356 tttgtctctccttctatttagagagaagtcttgtaattgtcttccact 46191403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 30697300 - 30697259
Alignment:
Q  433 ctctccttgtatttagagagaggtcctgtaatttcttccact 474  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  30697300 ctctccttgtatttagaaagaggtcttgtaatttcttccact 30697259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 474
Target Start/End: Complemental strand, 27508 - 27371
Alignment:
Q  328 agtgagggaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 427  Q
    |||||| | |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| |||||| |||||||  |||||||| ||||||    
T  27508 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattcacctattt-caagagaga-tggtaa 27419  T
Q  428 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccact 474  Q
    ||   ||||||||||||||||||||| ||  ||||||| |||||||||    
T  27418 tttgtctctccttgtatttagagagaagtattgtaattgtcttccact 27371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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