View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_15 (Length: 473)
Name: NF11268_low_15
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 27762734 - 27762288
Alignment:
| Q |
18 |
actgccaaggataaaactgactccaaaataagtaaattttgctcaagttgttgaaccatgccaacatttttaatattgttttgaagcacataatcagtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
27762734 |
actgccaaggataaaactgactccaaaataagtaaattttgctcaagttgttgaaccatgccaacattgtcaatattgttttgaagcacataatcagtta |
27762635 |
T |
|
| Q |
118 |
cattaggaaatgcaaattgaaatgaggtgcttgtatttggattctcattttgtattgttgtctccatcgcatgttgttgtgtca-cttgcaactttttat |
216 |
Q |
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| T |
27762634 |
cattaggaaatgcaaattgaaatgaggtgcttgtatttggattctcattttgtattgttgtctccattgcatgtttttgtgtcatcttgcaactttttat |
27762535 |
T |
|
| Q |
217 |
taggggctaccacatctataggtttctcaacaatagccaacgattgctcctctaagggcttttcaactataaccaatggttgctcctctaatggtttttc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27762534 |
taggggctaccacatctataggtttctcaacaatagccaacgattgctcctctaagggcttctcaactataaccaatggttgctcctctaatggtttttc |
27762435 |
T |
|
| Q |
317 |
aaaattaaccattggttgcttggtttgaggattcaaagtgttagtacaaattgctatggtactttctttggtgcttgctattctttgaccttcaaagctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27762434 |
aaaattaaccattggttgcttggtttgaggattcaaagtgttggtacaaattgctatggtactttctttggtgcttgctattctttaaccttcaaagctt |
27762335 |
T |
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| Q |
417 |
tatttgtatgatggatccattttccatttccaacagaatgccctatg |
463 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27762334 |
tatttgtatgatggatccattttccatttctaacagaatgccctatg |
27762288 |
T |
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