View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11268_low_18 (Length: 412)
Name: NF11268_low_18
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 4353388 - 4352989
Alignment:
| Q |
1 |
cctaaaagaattgaagtgctaaatagatggtatccaggagagaaaaaacaatcaactattcccagcttcaatgtgaagaaaagtgtttatttaatcaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
4353388 |
cctaaaagaattgaagtgctaaatagagggtatccaggagagaaaaaacaatcaactgttcccagcttcgatgtgaagaaaagtgtttatttaat-aaga |
4353290 |
T |
|
| Q |
101 |
tttcaagccacattatggtggaataattgcattacatattaccaacttggtatggtaagtaaccccataatatccattataaagctaatggacaaaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4353289 |
tttcaagccacattatggtggaataattgcattacatattaccaacttggtatggtaa----cacaataagatccattataaagttaatggacaaaatat |
4353194 |
T |
|
| Q |
201 |
tt---tagtgaaagtatatattttcatcctactaattggagtaagagtaggccacacaacaatcacttgcgtgtttcagccatttcagccttcttctgct |
297 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4353193 |
ttaagtagtgaaagtatatattttcatcctactaattggagtaagattaggccacacaacattcacttgcgtgtttcagccatttcagccttcttctgct |
4353094 |
T |
|
| Q |
298 |
ctttggctgaaacatatttatttaacaatcagtttcatgcttttgaatgtctgaatagaacaagcagaacaaacagtattttagacttaccagctttctc |
397 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4353093 |
ctttggctgaaacatatttatttaaaaatcagtttcatgcttttgaatgtctgaatagaacaagcagcacaaacagtattttagacttaccagctttctc |
4352994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University