View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_2 (Length: 933)
Name: NF11268_low_2
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_2 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 893; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 893; E-Value: 0
Query Start/End: Original strand, 2 - 918
Target Start/End: Original strand, 8316411 - 8317327
Alignment:
| Q |
2 |
accaagctcgacttagatgatattgatttatcatacaattataatccattgtgttcttattgtgaagaaatttgcactgattattgctatgactatgata |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8316411 |
accaagctcgacttagatgatattgatttatcatacaattataatccattgtgttcttattgcgaagaaatttgcactgattattgctatgactatgata |
8316510 |
T |
|
| Q |
102 |
aggttagttttctccctcttgttatcttatttgatagtccaccccaaaacattgatgataaattaagtaactctgatgattttggatgcagtataaattg |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316511 |
aggttagttttctccctcttgttatcttatttgatagtccaccccaaaacattgatgataaattaagtaactctgatgattttggatgcagtataaattg |
8316610 |
T |
|
| Q |
202 |
actgtatgtccaaggtgtcatgtttgcggcaatcataaagccaatttgcgcgatgcagaagtatatgaaaggcgtgtggagatagattttgagagcggga |
301 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316611 |
actgtatgtccaaggtgtcatgtttgcggaaatcataaagccaatttgcgcgatgcagaagtatatgaaaggcgtgtggagatagattttgagagcggga |
8316710 |
T |
|
| Q |
302 |
tgaaaatagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagagcacttctccttacttcaatctcaagcatggagttggaaagattttc |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316711 |
tgaaaatagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagagcacttctccttacttcaatctcaagcatggagttggaaagattttc |
8316810 |
T |
|
| Q |
402 |
tttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatcttgaatcggagagtaaaaattcttcggatccattcatctttt |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316811 |
tttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatcttgaatcggagagtaaaaattcttcggatccattcatctttt |
8316910 |
T |
|
| Q |
502 |
tatcagctcctcttttctgctcttacatctcattatcttttcaactgcacctccttagaagaattagaattggtactccatgtgttctccaccataaaat |
601 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8316911 |
tatcagctccccttttctgctcttacatctcattatcttttcaactgcacctccttagaagaattagaattggtactccatgtgtcctccaccataaaat |
8317010 |
T |
|
| Q |
602 |
ttcccagcatttctgttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaattt |
701 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317011 |
ttcccagcatttctgttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaattt |
8317110 |
T |
|
| Q |
702 |
accacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttccatagaacaa |
801 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8317111 |
accacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattgtagaagctcctctacttgaaattgtttccatagaacaa |
8317210 |
T |
|
| Q |
802 |
gacattgaattttattatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactctgggtatggta |
901 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317211 |
gacattgaattttataatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactctgggtatggta |
8317310 |
T |
|
| Q |
902 |
cagcacaactaattcat |
918 |
Q |
| |
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||||||||||||||||| |
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| T |
8317311 |
cagcacaactaattcat |
8317327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 804
Target Start/End: Complemental strand, 8359072 - 8358987
Alignment:
| Q |
719 |
ttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttccatagaacaagac |
804 |
Q |
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| T |
8359072 |
ttgatattaaaaactgcatttggtgtggtagaaaagatcttatcgtacaagctcctcttcttgaaaacatttccatagaacaagac |
8358987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 428 - 805
Target Start/End: Complemental strand, 2125 - 1745
Alignment:
| Q |
428 |
tatcccttcaaaatacttggatctctagcatcttgaatc---ggagagtaaaaattcttcggatccattcatctttttatcagctcctcttttctgctct |
524 |
Q |
| |
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|||| ||||||||||| |||||||||| |||||||||| ||||||| || | |||| |||||||||||| ||||||| | |||| ||||||| || |
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| T |
2125 |
tatcacttcaaaatacatggatctctaccatcttgaataataggagagtcaagaatcttaggatccattcatatttttataaactccccttttctcctag |
2026 |
T |
|
| Q |
525 |
tacatctcattatcttttcaactgcacctccttagaagaattagaattggtactccatgtgttctccaccataaaatttcccagcatttctgttcatttt |
624 |
Q |
| |
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||||||| ||||||||||| || | || || ||||| |||| ||| || | |||| ||| ||||||||||||||| | ||| |||||||| |
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| T |
2025 |
tacatctgattatcttttcggctcttcttcattgcaagaactagagttgcggcttaaagtgtactctaccataaaatttccctctacctctcttcatttt |
1926 |
T |
|
| Q |
625 |
ggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaatttaccacttcttagaaagtttgata |
724 |
Q |
| |
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||| |||||| | ||||| |||||||| |||||||| | |||||| ||||||| |||| | ||| |||||||||||| ||| | | ||||||||| | |
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| T |
1925 |
caacagctaaaatttctcaacttgtatggagtcttttttgacattgatccctctagtgactctatgaaccttaatttaccgcttgtaaaaaagtttgaga |
1826 |
T |
|
| Q |
725 |
tcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttccatagaacaagaca |
805 |
Q |
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||| |||||| ||| |||| ||||||| || ||||| || |||| | |||||||||| ||||||||||| |||||||| |
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| T |
1825 |
tcagtaactgccattagtcgaatggaaaatatgttattgtacaagcctccctacttgaaactgtttccataggacaagaca |
1745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 617 - 743
Target Start/End: Complemental strand, 28111560 - 28111434
Alignment:
| Q |
617 |
ttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaatttaccacttcttagaaa |
716 |
Q |
| |
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|||||||| ||| || ||| ||||||| |||||||| |||||||| | |||||| ||||||| |||| | ||| |||||||||||| ||| ||| ||| |
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|
| T |
28111560 |
ttcattttcaacagctgaaattcctcaacttgtatggagtcttttttgacattgatccctctagtgactctatgaaccttaatttaccgcttgttaaaaa |
28111461 |
T |
|
| Q |
717 |
gtttgatatcaaaaactgcaattggtc |
743 |
Q |
| |
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|||||| |||| |||||| ||||||| |
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| T |
28111460 |
gtttgagatcagtaactgccattggtc |
28111434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 461
Target Start/End: Complemental strand, 28111777 - 28111704
Alignment:
| Q |
388 |
ttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatctt |
461 |
Q |
| |
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||||||| |||||||| ||||| ||||||| ||| | |||| ||||||||||| ||||||||||||||||| |
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|
| T |
28111777 |
ttggaaaacttttcttttgtgatctataacaaacgttgtgtatcacttcaaaatacatggatctctagcatctt |
28111704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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