View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_23 (Length: 335)
Name: NF11268_low_23
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 52580163 - 52580487
Alignment:
| Q |
11 |
atgaaacaagaagacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttataaaatt |
110 |
Q |
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| T |
52580163 |
atgaaacaagaagacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttataaaatt |
52580262 |
T |
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| Q |
111 |
cattatgattatatcatcatgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttagtccaa |
210 |
Q |
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| T |
52580263 |
cattatgattatatcatcatgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttagtccaa |
52580362 |
T |
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| Q |
211 |
aagaaaagcttagaattgaatctttgcttgcagctacgccttgtaagttttgacttagtgcttcgtggagtttccactgcctcaggcttgaggtttaagc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580363 |
aagaaaagcttagaattgaatctttgcttgcagctacgccttgtaagttttggcttagtgcttcgtggagtttccactgcctcaggcttgaggtttaagc |
52580462 |
T |
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| Q |
311 |
ctaacatgttccacatcaactccac |
335 |
Q |
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| T |
52580463 |
ctaacatgttccacatcaactccac |
52580487 |
T |
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