View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_30 (Length: 261)
Name: NF11268_low_30
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 45237088 - 45236860
Alignment:
| Q |
11 |
cagagaggcatgaatattatctcctataacctcttgttgcaatgcttctgctaaaccacggaggccaaatttactggctgaataagctacataaccataa |
110 |
Q |
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| T |
45237088 |
cagagagacatgaatattatctcctataacctcttgttgcaatgcttctgctaaaccacggaggccaaatttactggctgaataagctacataaccataa |
45236989 |
T |
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| Q |
111 |
attcccacctaaactccaaattnnnnnnnnnnnnnnnnnnccacatcactagattatccctctacatactcaaaccgaaggctattttccatcatattta |
210 |
Q |
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| T |
45236988 |
attcccacctaaactccaaattaaaaaaataaataaaaaaccacatcactagattatctctctacatactcaaaccgaaggctattttccatcatattta |
45236889 |
T |
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| Q |
211 |
caactataggtgctaatccaacacacaca |
239 |
Q |
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| T |
45236888 |
caactataggtgctactccaacacacaca |
45236860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 7830082 - 7829972
Alignment:
| Q |
11 |
cagagaggcatgaatattatctcctataacctcttgttgcaatgcttctgctaaaccacggaggccaaatttactggctgaataagctacataaccataa |
110 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
7830082 |
cagagagacatgaatattatctccaataacctcttgttgcaatgcctctgctaacccacggaggccaaatttactagccgaataagctacatagccataa |
7829983 |
T |
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| Q |
111 |
attcccaccta |
121 |
Q |
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| T |
7829982 |
attcccaccta |
7829972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 7825396 - 7825355
Alignment:
| Q |
193 |
tattttccatcatatttacaactataggtgctaatccaacac |
234 |
Q |
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|||||| || ||||||||||||||||||||||| |||||||| |
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| T |
7825396 |
tatttttcaccatatttacaactataggtgctactccaacac |
7825355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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