View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_32 (Length: 252)
Name: NF11268_low_32
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
| Q |
12 |
gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca |
111 |
Q |
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| T |
11336209 |
gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca |
11336308 |
T |
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| Q |
112 |
tttttcccggtccagtttttagatgtatggcatgtgacaaacataaaagcaaggg-taggattaaaaggtttg |
183 |
Q |
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| T |
11336309 |
ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg |
11336381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
| Q |
79 |
gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatggcatgtgacaaacataaaagcaaggg-taggattaaaa |
177 |
Q |
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| T |
43379553 |
gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa |
43379454 |
T |
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| Q |
178 |
ggtttg |
183 |
Q |
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|||||| |
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| T |
43379453 |
ggtttg |
43379448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 11336399 - 11336449
Alignment:
| Q |
194 |
tagatgaaca--aaaaagcctacacgtgcgtctcctcttctcttctctctg |
242 |
Q |
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| T |
11336399 |
tagatgaacacaaaaaagcctacacgcgcgtctcctcttctcttctctctg |
11336449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 10740788 - 10740746
Alignment:
| Q |
25 |
attcaagaagaatcaaaccatgctcttgataccatgtaaacaa |
67 |
Q |
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| T |
10740788 |
attcaaggaggatcaaaccatgctcttgataccatgttaacaa |
10740746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 46964298 - 46964363
Alignment:
| Q |
12 |
gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata |
77 |
Q |
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| T |
46964298 |
gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata |
46964363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 16869741 - 16869676
Alignment:
| Q |
12 |
gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata |
77 |
Q |
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| T |
16869741 |
gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata |
16869676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 8985805 - 8985740
Alignment:
| Q |
12 |
gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata |
77 |
Q |
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| T |
8985805 |
gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata |
8985740 |
T |
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