View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11268_low_33 (Length: 249)
Name: NF11268_low_33
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11268_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1325708 - 1325952
Alignment:
| Q |
1 |
atactggtaataattttaaaaaatgaattaaacaaacataatcctatatgtcgatgc--------------gtgtcagacacgtaacacgccttcaatta |
86 |
Q |
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| T |
1325708 |
atactgataataattttaaaaaatgaattaaacaaacataatcctatatgtcgatgtcagacacgtaacatgtgtcagacactaaacacgccttcaatta |
1325807 |
T |
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| Q |
87 |
gaaatgtctatttcagtgcttctagacaacacatgcatattacatgcagagtaaatgagatcatggttgttgaagtggcaaagtaatatgaactagaaca |
186 |
Q |
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| T |
1325808 |
gaaatgtctgtttcagtgcttcaagacaacacatgcatattacatgcagagtaaatgagatcatggttgttgaagtggcaaagtaatatgaactagaaca |
1325907 |
T |
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| Q |
187 |
ggggaaaaacaaaataaataatcacaacaagacattggccatacc |
231 |
Q |
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| T |
1325908 |
ggggaaaaacaaaataaataatcacaacaagacattggccatacc |
1325952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 1322302 - 1322364
Alignment:
| Q |
116 |
cacatgcatattacatgcagagtaaatgagatc---atggttgttgaagtggcaaagtaatat |
175 |
Q |
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| T |
1322302 |
cacatgcatatttcatgcaaagtagatgagatcaatatgattgttgaagtggtaaagtaatat |
1322364 |
T |
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