View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11268_low_4 (Length: 796)

Name: NF11268_low_4
Description: NF11268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11268_low_4
NF11268_low_4
[»] chr5 (8 HSPs)
chr5 (8-776)||(5090758-5091524)
chr5 (586-657)||(27132990-27133061)
chr5 (592-634)||(21633522-21633564)
chr5 (592-634)||(21641769-21641811)
chr5 (431-484)||(17150420-17150473)
chr5 (437-498)||(25258239-25258300)
chr5 (437-498)||(25322029-25322090)
chr5 (614-655)||(35708274-35708314)
[»] chr8 (3 HSPs)
chr8 (431-484)||(35682968-35683021)
chr8 (394-479)||(5932141-5932227)
chr8 (591-644)||(45031371-45031424)
[»] chr2 (7 HSPs)
chr2 (592-655)||(33456018-33456080)
chr2 (437-498)||(2029854-2029915)
chr2 (398-479)||(43275510-43275591)
chr2 (437-484)||(34893510-34893557)
chr2 (592-634)||(884114-884156)
chr2 (586-656)||(17854927-17854997)
chr2 (592-638)||(27545117-27545163)
[»] scaffold0060 (1 HSPs)
scaffold0060 (592-638)||(13633-13679)
[»] chr7 (7 HSPs)
chr7 (668-740)||(96800-96872)
chr7 (586-634)||(1596844-1596892)
chr7 (592-638)||(9378850-9378896)
chr7 (586-656)||(29469621-29469691)
chr7 (592-638)||(31374822-31374868)
chr7 (433-474)||(29469686-29469727)
chr7 (453-498)||(36277164-36277209)
[»] chr4 (9 HSPs)
chr4 (312-364)||(17905123-17905175)
chr4 (433-484)||(28245713-28245764)
chr4 (604-638)||(28469812-28469846)
chr4 (604-638)||(28487440-28487474)
chr4 (592-634)||(35399262-35399304)
chr4 (592-634)||(35399421-35399463)
chr4 (594-632)||(39110966-39111004)
chr4 (431-484)||(11036698-11036751)
chr4 (312-365)||(48979482-48979535)
[»] chr6 (3 HSPs)
chr6 (433-484)||(12330131-12330182)
chr6 (592-638)||(5269274-5269320)
chr6 (451-484)||(20864048-20864081)
[»] chr1 (4 HSPs)
chr1 (591-634)||(102086-102129)
chr1 (592-638)||(43361553-43361599)
chr1 (455-496)||(2859567-2859608)
chr1 (593-638)||(43361758-43361803)
[»] chr3 (1 HSPs)
chr3 (592-633)||(40230645-40230686)


Alignment Details
Target: chr5 (Bit Score: 685; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 8 - 776
Target Start/End: Complemental strand, 5091524 - 5090758
Alignment:
Q  8 aagcagagaagcacattctttaccaaataaacaaataacaaaattcaatccaagcgtaaagtacaaaaatagatttcaattctaattaaaatagttataa 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5091524 aagcagagaagcacattctttaccaaataaacaa-taacaaaattcaatccaaacgtaaagtacaaaaatagatttcaattctaattaaaatagttataa 5091426  T
Q  108 ctcttcaaaatgttataccctgtccacattaaaaataaaacaaagctctattacaattacaatatgatattgactcaatccaatctaaaacaaattcaaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5091425 ctcttcaaaatgttataccctgtccacattaaaaataaaacaaagctctattacaattacaatatgatatcgactcaatccaatctaaaacaaattcaaa 5091326  T
Q  208 accaagtatagatcagtgttgttaaatagaggctataacggcactacagtgtagcagaatttggaccaataactataagttgtgatatgctatttcatac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5091325 accaagtatagatcagtgttgttaaatagaggctataacggcactacactgtagcagaatttggaccaataactataagttgtgatatgctatttcatac 5091226  T
Q  308 aaaatgttaagagtcctaaattggaagagataaggcctgaacataagtttataagtgatgggatgggaatcctcaccaccgtactggcctgttttgtaag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5091225 aaaatgttaagagtcctaaattggaagagataaggcctgaacataagtttataagtgatgggatgggaatcctcaccacggtactggcctgttttgtaag 5091126  T
Q  408 gttgatttaggcccaacgccaagtttaatatggtatcagggcatatccaagatccattgggccacctactattaggtcactgctatcggactaggccact 507  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5091125 gttgatttaggctcaacaccaagtttaatatggtatcagagcatatccaagatccattgggccacctactattaggtcactgctatcggactaggccact 5091026  T
Q  508 tagatcacgctctagatgttcaatcctatgcgcgggggttaagagtcccaaatcggaacaggtaaagtctgaacatgtagtgagggcaatcctcgcctta 607  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  5091025 tagatcacgctctagatgttcaatcctatgcgc-ggggttaagagtcccaaatcggaacaggtaaagtctgaacatgtagtgagggcaatcttcacctta 5090927  T
Q  608 caatccggttttgtagggttgagttagacccgacccagaattctaatatagaatgttataaaacagcggctataatagagctatagccctcttgcgtatc 707  Q
    |||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5090926 caatccggttttgtagggttgagttagatccaacccaaaattctaatataaaatgttataaaacagcggctataatagagctatagccctcttgcgtatc 5090827  T
Q  708 gaaatttgaacaaatcactattttctgctatccccgattaacaacaatagtatactgagtaaggtcaaa 776  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  5090826 gaaattttaacaaatcactactttctgctatcccggattaacaacaatagtatactgattaaggtcaaa 5090758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 657
Target Start/End: Complemental strand, 27133061 - 27132990
Alignment:
Q  586 agtgagggcaatcctcgccttacaatccggttttgtagggttgagttagacccgacccagaattctaatata 657  Q
    |||||||||||||||| ||| |||| |||||||||| |||||| ||||| ||| |||  || ||||||||||    
T  27133061 agtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatata 27132990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 634
Target Start/End: Complemental strand, 21633564 - 21633522
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttag 634  Q
    |||||||||| |||||||| ||||||||||| |||||||||||    
T  21633564 ggcaatcctcaccttacaaaccggttttgtaaggttgagttag 21633522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 634
Target Start/End: Complemental strand, 21641811 - 21641769
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttag 634  Q
    |||||||||| |||||||| ||||||||||| |||||||||||    
T  21641811 ggcaatcctcaccttacaaaccggttttgtaaggttgagttag 21641769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 484
Target Start/End: Complemental strand, 17150473 - 17150420
Alignment:
Q  431 tttaatatggtatcagggcatatccaagatccattgggccacctactattaggt 484  Q
    ||||| |||||||||| || | | ||||||||||||||||||||||||| ||||    
T  17150473 tttaagatggtatcagagcctcttcaagatccattgggccacctactatcaggt 17150420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 25258300 - 25258239
Alignment:
Q  437 atggtatcagggcatatccaagatccattgggccacctactattaggtcactgctatcggac 498  Q
    |||||||||| || | |||||||||||||||||||||| |||| ||||  | ||||||||||    
T  25258300 atggtatcagagcttctccaagatccattgggccacctgctatcaggtttccgctatcggac 25258239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 25322090 - 25322029
Alignment:
Q  437 atggtatcagggcatatccaagatccattgggccacctactattaggtcactgctatcggac 498  Q
    |||||||||| || | |||||||||||||||||||||| |||| ||||  | ||||||||||    
T  25322090 atggtatcagagcttctccaagatccattgggccacctgctatcaggtttccgctatcggac 25322029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 655
Target Start/End: Complemental strand, 35708314 - 35708274
Alignment:
Q  614 ggttttgtagggttgagttagacccgacccagaattctaata 655  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  35708314 ggttttgttgggttgagttagacccgaccca-aattctaata 35708274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 431 - 484
Target Start/End: Complemental strand, 35683021 - 35682968
Alignment:
Q  431 tttaatatggtatcagggcatatccaagatccattgggccacctactattaggt 484  Q
    |||||||||||||||  |||| |||||||||||||||||||||| |||||||||    
T  35683021 tttaatatggtatcatagcatctccaagatccattgggccacctgctattaggt 35682968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 5932227 - 5932141
Alignment:
Q  394 gcctgttttgtaaggttgatttaggcccaacg-ccaagtttaatatggtatcagggcatatccaagatccattgggccacctactat 479  Q
    |||||||||||  |||||  |||||||||||  |||  ||||| |||||||||| || | ||||||||||||||| |||||||||||    
T  5932227 gcctgttttgtggggttgtgttaggcccaaccaccatttttaagatggtatcagagcctctccaagatccattggaccacctactat 5932141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 644
Target Start/End: Complemental strand, 45031424 - 45031371
Alignment:
Q  591 gggcaatcctcgccttacaatccggttttgtagggttgagttagacccgaccca 644  Q
    ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| |||||    
T  45031424 gggcaatcctcaccttacaagccggttttgtaaggttgtgttaggcccaaccca 45031371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 655
Target Start/End: Original strand, 33456018 - 33456080
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttagacccgacccagaattctaata 655  Q
    |||||||||| |||||||| ||||||||||| ||||||||||| ||| ||||| ||||||||||    
T  33456018 ggcaatcctcaccttacaaaccggttttgtaaggttgagttaggcccaaccca-aattctaata 33456080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 498
Target Start/End: Original strand, 2029854 - 2029915
Alignment:
Q  437 atggtatcagggcatatccaagatccattgggccacctactattaggtcactgctatcggac 498  Q
    |||||||||| || | |||||||||||||||||||||| |||||||||  | ||||||||||    
T  2029854 atggtatcagagcctctccaagatccattgggccacctgctattaggtttccgctatcggac 2029915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 43275510 - 43275591
Alignment:
Q  398 gttttgtaaggttgatttaggcccaacgccaagtttaatatggtatcagggcatatccaagatccattgggccacctactat 479  Q
    ||||||||||||| | |||| |||||| | ||||||||||||||||||| || ||||| ||||   |||||||| |||||||    
T  43275510 gttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgagatatgttgggccatctactat 43275591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 34893510 - 34893557
Alignment:
Q  437 atggtatcagggcatatccaagatccattgggccacctactattaggt 484  Q
    |||||||||| || | ||||||||||||||||||||||||||| ||||    
T  34893510 atggtatcagagcctctccaagatccattgggccacctactatcaggt 34893557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 634
Target Start/End: Original strand, 884114 - 884156
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttag 634  Q
    |||||||||| |||||||| ||||||||||| |||||||||||    
T  884114 ggcaatcctcaccttacaagccggttttgtaaggttgagttag 884156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 656
Target Start/End: Complemental strand, 17854997 - 17854927
Alignment:
Q  586 agtgagggcaatcctcgccttacaatccggttttgtagggttgagttagacccgacccagaattctaatat 656  Q
    |||||||||||||||| ||| |||| |||||||||| |||||| | ||||||| |||  || |||||||||    
T  17854997 agtgagggcaatcctcacctcacaagccggttttgtggggttgtgctagacccaaccacgatttctaatat 17854927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 638
Target Start/End: Complemental strand, 27545163 - 27545117
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttagaccc 638  Q
    |||||||||| |||||||| ||||||||||| || ||||||||||||    
T  27545163 ggcaatcctcaccttacaaaccggttttgtaaggatgagttagaccc 27545117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 638
Target Start/End: Complemental strand, 13679 - 13633
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttagaccc 638  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||||    
T  13679 ggcaatcctcaccttacaagccggttttgtaaggttgagttagaccc 13633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 668 - 740
Target Start/End: Complemental strand, 96872 - 96800
Alignment:
Q  668 aaacagcggctataatagagctatagccctcttgcgtatcgaaatttgaacaaatcactattttctgctatcc 740  Q
    |||||||||||||| ||| |||||||| || ||||||| || ||||| |||||  | ||||||||||||||||    
T  96872 aaacagcggctatagtagcgctatagcactattgcgtagcggaattttaacaatacgctattttctgctatcc 96800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 586 - 634
Target Start/End: Original strand, 1596844 - 1596892
Alignment:
Q  586 agtgagggcaatcctcgccttacaatccggttttgtagggttgagttag 634  Q
    |||| ||||||||||| |||||||| ||||||||||||||||| |||||    
T  1596844 agtgggggcaatcctcaccttacaagccggttttgtagggttgtgttag 1596892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 638
Target Start/End: Original strand, 9378850 - 9378896
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttagaccc 638  Q
    ||||||||| ||||||||| ||||||||||| || ||||||||||||    
T  9378850 ggcaatccttgccttacaagccggttttgtaaggatgagttagaccc 9378896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 656
Target Start/End: Original strand, 29469621 - 29469691
Alignment:
Q  586 agtgagggcaatcctcgccttacaatccggttttgtagggttgagttagacccgacccagaattctaatat 656  Q
    |||| ||||||||||| |||||||| |||||||||| |||||| ||||| ||| |||  || |||||||||    
T  29469621 agtgggggcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatat 29469691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 638
Target Start/End: Original strand, 31374822 - 31374868
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttagaccc 638  Q
    |||||||||| |||||||| ||||||||||| || ||||||||||||    
T  31374822 ggcaatcctcaccttacaagccggttttgtaaggatgagttagaccc 31374868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 474
Target Start/End: Original strand, 29469686 - 29469727
Alignment:
Q  433 taatatggtatcagggcatatccaagatccattgggccacct 474  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  29469686 taatatggtatcagagcctctccaagatccattgggccacct 29469727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 36277209 - 36277164
Alignment:
Q  453 tccaagatccattgggccacctactattaggtcactgctatcggac 498  Q
    ||||||||||||||||||||||||||| ||||  | ||||||||||    
T  36277209 tccaagatccattgggccacctactatcaggtttccgctatcggac 36277164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 17905123 - 17905175
Alignment:
Q  312 tgttaagagtcctaaattggaagagataaggcctgaacataagtttataagtg 364  Q
    ||||||||| || | |||||| |||||||||| ||||||||||||||||||||    
T  17905123 tgttaagaggccaacattggatgagataaggcttgaacataagtttataagtg 17905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 28245764 - 28245713
Alignment:
Q  433 taatatggtatcagggcatatccaagatccattgggccacctactattaggt 484  Q
    |||||||||||||| || | |||||||||||||||||||||| |||| ||||    
T  28245764 taatatggtatcagagcctctccaagatccattgggccacctgctatcaggt 28245713  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 638
Target Start/End: Original strand, 28469812 - 28469846
Alignment:
Q  604 cttacaatccggttttgtagggttgagttagaccc 638  Q
    ||||||| |||||||||||||||||||||||||||    
T  28469812 cttacaagccggttttgtagggttgagttagaccc 28469846  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 638
Target Start/End: Original strand, 28487440 - 28487474
Alignment:
Q  604 cttacaatccggttttgtagggttgagttagaccc 638  Q
    ||||||| |||||||||||||||||||||||||||    
T  28487440 cttacaagccggttttgtagggttgagttagaccc 28487474  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 634
Target Start/End: Complemental strand, 35399304 - 35399262
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttag 634  Q
    |||||||||| |||||||| ||||||||||| |||||||||||    
T  35399304 ggcaatcctcaccttacaagccggttttgtaaggttgagttag 35399262  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 634
Target Start/End: Complemental strand, 35399463 - 35399421
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttag 634  Q
    |||||||||| |||||||| ||||||||||| |||||||||||    
T  35399463 ggcaatcctcaccttacaagccggttttgtaaggttgagttag 35399421  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 632
Target Start/End: Original strand, 39110966 - 39111004
Alignment:
Q  594 caatcctcgccttacaatccggttttgtagggttgagtt 632  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  39110966 caatcctcgccttacaagccggttttgtaaggttgagtt 39111004  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 484
Target Start/End: Complemental strand, 11036751 - 11036698
Alignment:
Q  431 tttaatatggtatcagggcatatccaagatccattgggccacctactattaggt 484  Q
    ||||| |||||||||| ||   || |||||||||||||||||||||||||||||    
T  11036751 tttaagatggtatcagagccactctaagatccattgggccacctactattaggt 11036698  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 48979535 - 48979482
Alignment:
Q  312 tgttaagagtcctaaattggaagagataaggcctgaacataagtttataagtga 365  Q
    |||||||||||| | ||| || |||||||||| ||||||| |||||||||||||    
T  48979535 tgttaagagtcccacattagatgagataaggcatgaacatgagtttataagtga 48979482  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 12330182 - 12330131
Alignment:
Q  433 taatatggtatcagggcatatccaagatccattgggccacctactattaggt 484  Q
    |||||||||||||| || | |||||||||||||||||||||| |||| ||||    
T  12330182 taatatggtatcagagcctctccaagatccattgggccacctgctatcaggt 12330131  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 638
Target Start/End: Complemental strand, 5269320 - 5269274
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttagaccc 638  Q
    |||||||||| |||||||| ||||||||||| || ||||||||||||    
T  5269320 ggcaatcctcaccttacaagccggttttgtaaggatgagttagaccc 5269274  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 20864048 - 20864081
Alignment:
Q  451 tatccaagatccattgggccacctactattaggt 484  Q
    |||||||||||||||||||||||| |||||||||    
T  20864048 tatccaagatccattgggccacctgctattaggt 20864081  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 634
Target Start/End: Complemental strand, 102129 - 102086
Alignment:
Q  591 gggcaatcctcgccttacaatccggttttgtagggttgagttag 634  Q
    ||||| ||||| |||||||| |||||||||||||||||||||||    
T  102129 gggcattcctcaccttacaagccggttttgtagggttgagttag 102086  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 638
Target Start/End: Complemental strand, 43361599 - 43361553
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagttagaccc 638  Q
    |||||||||| |||||||| ||||||||||| || ||||||||||||    
T  43361599 ggcaatcctcaccttacaagccggttttgtaaggatgagttagaccc 43361553  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 496
Target Start/End: Complemental strand, 2859608 - 2859567
Alignment:
Q  455 caagatccattgggccacctactattaggtcactgctatcgg 496  Q
    |||||||||||||||||||| |||||||||  ||||||||||    
T  2859608 caagatccattgggccaccttctattaggtttctgctatcgg 2859567  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 638
Target Start/End: Complemental strand, 43361803 - 43361758
Alignment:
Q  593 gcaatcctcgccttacaatccggttttgtagggttgagttagaccc 638  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||    
T  43361803 gcaatcctcaccttacaagccggttttgtaaggatgagttagaccc 43361758  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 40230686 - 40230645
Alignment:
Q  592 ggcaatcctcgccttacaatccggttttgtagggttgagtta 633  Q
    |||||||||| |||||||| ||||||||||| ||||||||||    
T  40230686 ggcaatcctcaccttacaagccggttttgtaaggttgagtta 40230645  T

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